Mercurial > repos > diego > rtg_investigator
comparison tools/rtg/sdf2fasta.xml @ 1:8593828f91e7 default tip
Full galaxy wrapper
author | diego |
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date | Sat, 21 Apr 2012 21:36:15 -0400 |
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0:d50638ebd809 | 1:8593828f91e7 |
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1 <tool id="rtg_sdf2fasta" name="Extract FASTA" force_history_refresh="True"> | |
2 <description>from SDF with sdf2fasta</description> | |
3 <command interpreter="bash">galaxy-rtg-sdf2fasta-wrapper.sh $output1 $output1.id $__new_file_path__ | |
4 -l $l | |
5 -i ${input.extra_files_path} | |
6 -Z | |
7 </command> | |
8 <inputs> | |
9 <param name="input" type="data" format="rtg_sdf" label="Source SDF"/> | |
10 <param name="l" type="integer" value="80" label="Line length"/> | |
11 </inputs> | |
12 <outputs> | |
13 <data name="output1" format="fasta"/> | |
14 </outputs> | |
15 | |
16 <help> | |
17 This tool converts an RTG SDF to FASTA. | |
18 </help> | |
19 | |
20 </tool> |