Mercurial > repos > dktanwar > csaw_bioc

changeset 1:6b07ed38b117 draft default tip

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Uploaded
author dktanwar
date Thu, 23 Nov 2017 11:08:52 -0500
parents a8bae0bd3d50
children
files meta.yaml
diffstat 1 files changed, 60 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/meta.yaml	Thu Nov 23 11:08:52 2017 -0500
@@ -0,0 +1,60 @@
+{% set version = "1.12.0" %}
+{% set name = "csaw" %}
+{% set bioc = "3.6" %}
+
+package:
+  name: 'bioconductor-{{ name|lower }}'
+  version: '{{ version }}'
+source:
+  fn: '{{ name }}_{{ version }}.tar.gz'
+  url:
+    - 'http://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
+    - 'https://depot.galaxyproject.org/software/{{ name }}/{{ name }}_{{ version }}_src_all.tar.gz'
+  sha256: 894cf793f221c0cc2564f1f1c43ca899a7ca6f925e0ba7cd7365388e996d844b
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+requirements:
+  build:
+    - bioconductor-annotationdbi
+    - bioconductor-biocgenerics
+    - bioconductor-biocparallel
+    - bioconductor-edger
+    - bioconductor-genomeinfodb
+    - bioconductor-genomicfeatures
+    - bioconductor-genomicranges
+    - bioconductor-iranges
+    - bioconductor-limma
+    - bioconductor-rhtslib
+    - bioconductor-rsamtools
+    - bioconductor-s4vectors
+    - 'bioconductor-summarizedexperiment >=1.2.0'
+    - r-base
+    - r-rcpp
+    - gcc  # [linux]
+    - llvm  # [osx]
+  run:
+    - bioconductor-annotationdbi
+    - bioconductor-biocgenerics
+    - bioconductor-biocparallel
+    - bioconductor-edger
+    - bioconductor-genomeinfodb
+    - bioconductor-genomicfeatures
+    - bioconductor-genomicranges
+    - bioconductor-iranges
+    - bioconductor-limma
+    - bioconductor-rhtslib
+    - bioconductor-rsamtools
+    - bioconductor-s4vectors
+    - 'bioconductor-summarizedexperiment >=1.2.0'
+    - r-base
+    - r-rcpp
+test:
+  commands:
+    - '$R -e "library(''{{ name }}'')"'
+about:
+  home: 'http://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
+  license: GPL-3
+  summary: 'Detection of differentially bound regions in ChIP-seq data with sliding windows, with methods for normalization and proper FDR control.'