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view 01_mismatch_removal/mismatchRemovalSam.xml @ 4:b725dac6f94c draft
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author | dktanwar |
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date | Mon, 16 Oct 2017 10:21:55 -0400 |
parents | 90de2c9de6eb |
children | 7525c61b6e6e |
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<tool id="mismatchRemovalSam" name="Remove Mismatches (SNPs) from SAM" version="0.1.0"> <requirements> </requirements> <command detect_errors="exit_code"><![CDATA[ mismatchRemovalSam "$input1" 3 > "$output1" ]]></command> <inputs> <param type="data" name="input1" format="sam" /> <param type="integer" name="SNPs/ mismatches allowed" value="3" /> </inputs> <outputs> <data name="output1" format="sam" /> </outputs> <tests> <test> <param name="input1" value="input.sam"/> <output name="output1" file="output.sam"/> </test> </tests> <help><![CDATA[ /bin/sh: mismatchRemovalSam: command not found ]]></help> <citations> <citation type="bibtex"> @misc{github01_mismatch_removal, author = {LastTODO, FirstTODO}, year = {TODO}, title = {01_mismatch_removal}, publisher = {GitHub}, journal = {GitHub repository}, url = {https://github.com/dktanwar/Galaxy_Tools/tree/master/01_mismatch_removal}, }</citation> </citations> </tool>