# HG changeset patch
# User dktanwar
# Date 1508178000 14400
# Node ID cd9c123ab04f81c5c9ac64fac897fbc0355a3119
# Parent  11377edbbea220931b7b3a1ed0047dcfa7576e8e
Uploaded

diff -r 11377edbbea2 -r cd9c123ab04f 01_RemoveSNPs/RemoveSNPs.xml
--- a/01_RemoveSNPs/RemoveSNPs.xml	Mon Oct 16 14:12:23 2017 -0400
+++ b/01_RemoveSNPs/RemoveSNPs.xml	Mon Oct 16 14:20:00 2017 -0400
@@ -2,18 +2,18 @@
     <requirements>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
-        bash $__tool_directory__/RemoveSNPs "$SAM alignment files" 3 > "$output1"
+        bash $__tool_directory__/RemoveSNPs "$SAM_files" "$SNPs_allowed" > "$output1"
     ]]></command>
     <inputs>
-        <param type="data" name="SAM alignment files" format="sam" />
-	<param type="integer" name="SNPs/ mismatches allowed" value="3" />
+        <param type="data" name="SAM_files" format="sam" />
+	<param type="integer" name="SNPs_allowed" value="3" />
     </inputs>
     <outputs>
         <data name="output1" format="sam" />
     </outputs>
     <tests>
         <test>
-            <param name="SAM alignment files" value="input.sam"/>
+            <param name="SAM_files" value="input.sam"/>
             <output name="output1" file="output.sam"/>
         </test>
     </tests>