Mercurial > repos > dktanwar > removesnp

changeset 4:c1951c420194 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Deleted selected files
author dktanwar
date Mon, 16 Oct 2017 14:04:06 -0400
parents 0e0d1533d01b
children 0f58b2dd873f
files 01_RemoveSNPs/test.xml
diffstat 1 files changed, 0 insertions(+), 35 deletions(-) [+]
line wrap: on
line diff
--- a/01_RemoveSNPs/test.xml	Mon Oct 16 14:03:56 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,35 +0,0 @@
-<tool id="RemoveSNPs" name="Remove Mismatches (SNPs) from SAM Alignment file" version="0.1.0">
-    <requirements>
-    </requirements>
-    <command detect_errors="exit_code"><![CDATA[
-        bash $__tool_directory__/RemoveSNPs "$input1" 3 > "$output1"
-    ]]></command>
-    <inputs>
-        <param type="data" name="input1" format="sam" />
-<param type="integer" name="SNPs/ mismatches allowed" value="3" />
-    </inputs>
-    <outputs>
-        <data name="output1" format="sam" />
-    </outputs>
-    <tests>
-        <test>
-            <param name="input1" value="input.sam"/>
-            <output name="output1" file="output.sam"/>
-        </test>
-    </tests>
-    <help><![CDATA[
-        This program will remove mismatches from sam file.
-        Usage: RemoveSNPs test.sam 3
-    ]]></help>
-    <citations>
-        <citation type="bibtex">
-@misc{RemoveSNPs,
-  author = {Tanwar, Deepak},
-  year = {2017},
-  title = {RemoveSNPs},
-  publisher = {GitHub},
-  journal = {GitHub repository},
-  url = {https://github.com/dktanwar/NGS_Sperm_H3K4me3_Planemo_tools/tree/master/01_RemoveSNPs},
-}</citation>
-    </citations>
-</tool>