Mercurial > repos > dktanwar > removesnp
changeset 2:cbf933adf6fd draft
Deleted selected files
| author | dktanwar |
|---|---|
| date | Mon, 16 Oct 2017 14:03:28 -0400 |
| parents | d6c27ab8d084 |
| children | 0e0d1533d01b |
| files | RemoveSNPs.xml |
| diffstat | 1 files changed, 0 insertions(+), 35 deletions(-) [+] |
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--- a/RemoveSNPs.xml Mon Oct 16 14:03:24 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,35 +0,0 @@ -<tool id="RemoveSNPs" name="Remove Mismatches (SNPs) from SAM Alignment file" version="0.1.0"> - <requirements> - </requirements> - <command detect_errors="exit_code"><![CDATA[ - bash $__tool_directory__/RemoveSNPs "$input1" 3 > "$output1" - ]]></command> - <inputs> - <param type="data" name="SAM alignment files" format="sam" /> - <param type="integer" name="SNPs/ mismatches allowed" value="3" /> - </inputs> - <outputs> - <data name="output1" format="sam" /> - </outputs> - <tests> - <test> - <param name="input1" value="input.sam"/> - <output name="output1" file="output.sam"/> - </test> - </tests> - <help><![CDATA[ - This program will remove mismatches from sam file. - Usage: RemoveSNPs test.sam 3 - ]]></help> - <citations> - <citation type="bibtex"> -@misc{RemoveSNPs, - author = {Tanwar, Deepak}, - year = {2017}, - title = {RemoveSNPs}, - publisher = {GitHub}, - journal = {GitHub repository}, - url = {https://github.com/dktanwar/NGS_Sperm_H3K4me3_Planemo_tools/tree/master/01_RemoveSNPs}, -}</citation> - </citations> -</tool>