Mercurial > repos > dktanwar > test_csaw_1

diff csaw.xml @ 1:63fdbd0a8fc3 draft

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author dktanwar
date Mon, 11 Dec 2017 10:03:46 -0500
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children ed929b85b051
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/csaw.xml	Mon Dec 11 10:03:46 2017 -0500
@@ -0,0 +1,31 @@
+<tool id="CSAW" name="CSAW" version="0.1.0">
+  <command detect_errors="exit_code"><![CDATA[
+Rscript $__tool_directory__/csaw.R $inputs $output
+    ]]></command>
+  <inputs>
+    <param type="data" name="inputs" format="bam" multiple="True" />
+  </inputs>
+  <outputs>
+    <data name="output" format="txt" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="inputs" value="ENCFF027UTM.bam,ENCFF027UTM_1.bam"/>
+      <output name="output" file="csaw_results"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+        Write the tool help section here.
+    ]]></help>
+  <citations>
+    <citation type="bibtex">
+      @misc{github01_mismatch_removal,
+      author = {LastTODO, FirstTODO},
+      year = {TODO},
+      title = {01_mismatch_removal},
+      publisher = {GitHub},
+      journal = {GitHub repository},
+      url = {https://github.com/dktanwar/Galaxy_Tools/tree/master/01_mismatch_removal},
+      }</citation>
+  </citations>
+</tool>