Mercurial > repos > dlalgroup > simtext_app
comparison Dockerfile @ 0:34ed44f3f85c draft
"planemo upload for repository https://github.com/dlal-group/simtext commit fd3f5b7b0506fbc460f2a281f694cb57f1c90a3c-dirty"
| author | dlalgroup |
|---|---|
| date | Thu, 24 Sep 2020 02:17:05 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:34ed44f3f85c |
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| 1 FROM rocker/r-ubuntu:20.04 | |
| 2 WORKDIR /simtext | |
| 3 COPY . . | |
| 4 | |
| 5 RUN apt-get update -qq && apt-get -y upgrade && apt-get -y --no-install-recommends install \ | |
| 6 libssl-dev \ | |
| 7 file \ | |
| 8 zlib1g-dev \ | |
| 9 libcurl4-openssl-dev \ | |
| 10 libxml2-dev \ | |
| 11 libjpeg-dev \ | |
| 12 && Rscript -e 'if (!require("shiny")) install.packages("shiny", repos="https://cloud.r-project.org");' \ | |
| 13 && Rscript -e 'if (!require("plotly")) install.packages("plotly", repos="https://cloud.r-project.org");' \ | |
| 14 && Rscript -e 'if (!require("DT")) install.packages("DT", repos="https://cloud.r-project.org");' \ | |
| 15 && Rscript -e 'if (!require("shinycssloaders")) install.packages("shinycssloaders", repos="https://cloud.r-project.org");' \ | |
| 16 && Rscript -e 'if (!require("shinythemes")) install.packages("shinythemes", repos="https://cloud.r-project.org");' \ | |
| 17 && Rscript -e 'if (!require("tableHTML")) install.packages("tableHTML", repos="https://cloud.r-project.org");' \ | |
| 18 && Rscript -e 'if (!require("argparse")) install.packages("argparse", repos="https://cloud.r-project.org");' \ | |
| 19 && Rscript -e 'if (!require("PubMedWordcloud")) install.packages("PubMedWordcloud", repos="https://cloud.r-project.org");' \ | |
| 20 && Rscript -e 'if (!require("ggplot2")) install.packages("ggplot2", repos="https://cloud.r-project.org");' \ | |
| 21 && Rscript -e 'if (!require("stringr")) install.packages("stringr", repos="https://cloud.r-project.org");' \ | |
| 22 && Rscript -e 'if (!require("tidyr")) install.packages("tidyr", repos="https://cloud.r-project.org");' \ | |
| 23 && Rscript -e 'if (!require("magrittr")) install.packages("magrittr", repos="https://cloud.r-project.org");' \ | |
| 24 && Rscript -e 'if (!require("plyr")) install.packages("plyr", repos="https://cloud.r-project.org");' \ | |
| 25 && Rscript -e 'if (!require("ggpubr")) install.packages("ggpubr", repos="https://cloud.r-project.org");' \ | |
| 26 && Rscript -e 'if (!require("rafalib")) install.packages("rafalib", repos="https://cloud.r-project.org");' \ | |
| 27 && Rscript -e 'if (!require("RColorBrewer")) install.packages("RColorBrewer", repos="https://cloud.r-project.org");' \ | |
| 28 && Rscript -e 'if (!require("dendextend")) install.packages("dendextend", repos="https://cloud.r-project.org");' \ | |
| 29 && Rscript -e 'if (!require("Rtsne")) install.packages("Rtsne", repos="https://cloud.r-project.org");' \ | |
| 30 && Rscript -e 'if (!require("umap")) install.packages("umap", repos="https://cloud.r-project.org");' \ | |
| 31 && Rscript -e 'if (!require("reutils")) install.packages("reutils", repos="https://cloud.r-project.org");' \ | |
| 32 && Rscript -e 'if (!require("textclean")) install.packages("textclean", repos="https://cloud.r-project.org");' \ | |
| 33 && Rscript -e 'if (!require("easyPubMed")) install.packages("easyPubMed", repos="https://cloud.r-project.org");' \ | |
| 34 && Rscript -e 'if (!require("RCurl")) install.packages("RCurl", repos="https://cloud.r-project.org");' \ | |
| 35 && Rscript -e 'if (!require("SnowballC")) install.packages("SnowballC", repos="https://cloud.r-project.org");' \ | |
| 36 && Rscript -e 'if (!require("SemNetCleaner")) install.packages("SemNetCleaner", repos="https://cloud.r-project.org");' | |
| 37 | |
| 38 ENV PATH "/simtext/:${PATH}" |