# HG changeset patch
# User dongjun
# Date 1315836053 14400
# Node ID 7796cbc040c4826ce4b0a952d75a4a782c34c0dc
# Parent  3b583c9d06d470537c27f4fb2d7a5ee91a25af3a
Deleted selected files

diff -r 3b583c9d06d4 -r 7796cbc040c4 bowtie_indices.loc.sample
--- a/bowtie_indices.loc.sample	Mon Sep 12 10:00:36 2011 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,44 +0,0 @@
-hg18	hg18	Human (Homo sapiens): hg18	/scratch/dongjun/galaxy/bowtie_indexes/
-mm9	mm9	Mouse (Mus musculus): mm9	/p/keles/SOFTWARE/bowtie-0.12.5/indexes/
-e_coli	eschColi_536	Escherichia coli (str. 536)	/p/keles/SOFTWARE/bowtie-0.12.5/indexes/
-e_coli_K12	eschColi_K12	Escherichia coli K12 (eschColi_K12)	/scratch/dongjun/galaxy/bowtie_indexes/
-c_elegans_ws200	ce7	Caenorhabditis elegans (Feb 2009): WS200/ce7	/p/keles/SOFTWARE/bowtie-0.12.5/indexes/
-a_thaliana	a_thaliana	Arabidopsis thaliana	/p/keles/SOFTWARE/bowtie-0.12.5/indexes/
-
-#This is a sample file distributed with Galaxy that enables tools
-#to use a directory of Bowtie indexed sequences data files. You will
-#need to create these data files and then create a bowtie_indices.loc
-#file similar to this one (store it in this directory) that points to
-#the directories in which those files are stored. The bowtie_indices.loc
-#file has this format (longer white space characters are TAB characters):
-#
-#<unique_build_id>   <dbkey>   <display_name>   <file_base_path>
-#
-#So, for example, if you had hg18 indexed stored in 
-#/depot/data2/galaxy/bowtie/hg18/, 
-#then the bowtie_indices.loc entry would look like this:
-#
-#hg18   hg18   hg18   /depot/data2/galaxy/bowtie/hg18/hg18
-#
-#and your /depot/data2/galaxy/bowtie/hg18/ directory
-#would contain hg18.*.ebwt files:
-#
-#-rw-r--r--  1 james    universe 830134 2005-09-13 10:12 hg18.1.ebwt
-#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg18.2.ebwt
-#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 hg18.3.ebwt
-#...etc...
-#
-#Your bowtie_indices.loc file should include an entry per line for each
-#index set you have stored. The "file" in the path does not actually
-#exist, but it is the prefix for the actual index files. For example:
-#
-#hg18canon          hg18   hg18 Canonical   /depot/data2/galaxy/bowtie/hg18/hg18canon
-#hg18full           hg18   hg18 Full        /depot/data2/galaxy/bowtie/hg18/hg18full
-#/orig/path/hg19    hg19   hg19             /depot/data2/galaxy/bowtie/hg19/hg19
-#...etc...
-#
-#Note that for backwards compatibility with workflows, the unique ID of
-#an entry must be the path that was in the original loc file, because that
-#is the value stored in the workflow for that parameter. That is why the
-#hg19 entry above looks odd. New genomes can be better-looking.
-#