Mercurial > repos > drosofff > blast_to_scaffold

comparison blast_to_scaffold.xml @ 5:81ffa74cf96e draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/blast_to_scaffold commit b6de14061c479f0418cd89e26d6f5ac26e565a07
author drosofff
date Wed, 09 Nov 2016 11:38:39 -0500
parents 3288cc5a57e5
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4:3288cc5a57e5 5:81ffa74cf96e
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34 <help> 34 <help>
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37 **What it Does** 37 **What it Does**
38 This tool start from DNA contigs that aligned to a subject DNA sequence through blastn or tblastx. 38 This tool starts from DNA contigs that aligned to a subject DNA sequence through blastn or tblastx.
39 The contigs must be provided in fasta format. The blastn or tblastx output must be tabular, the 12 standard column plus column 13 with the length of the blastn or tblastx subject. 39 The contigs must be provided in fasta format. The blastn or tblastx output must be tabular, the 12 standard column plus column 13 with the length of the blastn or tblastx subject.
40 The sequence used to BLAST (blastn or tblastx) the contigs must be provided to serve as a guide to the final assembly 40 The sequence used to BLAST (blastn or tblastx) the contigs must be provided to serve as a guide to the final assembly
41 The final assembly is a DNA sequence. 41 The final assembly is a DNA sequence.
42 Nucleotides of the guide sequence which were not covered by contigs are in small letters in the output assembly. 42 Nucleotides of the guide sequence which were not covered by contigs are in small letters in the output assembly.
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