comparison retrieve_fasta_from_NCBI.py @ 3:a9d8f69d59fb draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/fetch_fasta_from_ncbi commit b6de14061c479f0418cd89e26d6f5ac26e565a07

2:befdb392fece

import time
import urllib
import urllib2
import httplib
import re
class Eutils:

    def __init__(self, options, logger):
        self.logger = logger
        self.base = "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/"
        self.query_string = options.query_string
        self.dbname = options.dbname
        if options.outname:
            self.outname = options.outname
        else:

3:a9d8f69d59fb

import time
import urllib
import urllib2
import httplib
import re


class Eutils:

    def __init__(self, options, logger):
        self.logger = logger
        self.base = "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/"
        self.query_string = options.query_string
        self.dbname = options.dbname
        if options.outname:
            self.outname = options.outname
        else: