annotate Galaxy-Workflow-Metavisitor__Trinity_test_in_Use_Case_2-2.ga @ 5:26e2d79e4c17 draft default tip

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit aa9e87614903f27fa5359ce8c437eb6961d68c62
author drosofff
date Mon, 17 Apr 2017 07:57:13 -0400
parents ba15c770fd40
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
1 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
2 "a_galaxy_workflow": "true",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
3 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
4 "format-version": "0.1",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
5 "name": "Metavisitor: Trinity test in Use Case 2-2",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
6 "steps": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
7 "0": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
8 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
9 "content_id": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
10 "id": 0,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
11 "input_connections": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
12 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
13 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
14 "description": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
15 "name": "Input Dataset Collection"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
16 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
17 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
18 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
19 "name": "Input dataset collection",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
20 "outputs": [],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
21 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
22 "left": 199.90625,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
23 "top": 264.59375
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
24 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
25 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
26 "tool_id": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
27 "tool_state": "{\"collection_type\": \"list\", \"name\": \"Input Dataset Collection\"}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
28 "tool_version": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
29 "type": "data_collection_input",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
30 "uuid": "3b7db228-7d72-4b8a-9296-5e51ceda8cdd",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
31 "workflow_outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
32 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
33 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
34 "output_name": "output",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
35 "uuid": "dd803215-4fa9-4444-83df-06e42912b545"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
36 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
37 ]
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
38 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
39 "1": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
40 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
41 "content_id": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
42 "id": 1,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
43 "input_connections": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
44 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
45 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
46 "description": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
47 "name": "Protein Blast database"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
48 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
49 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
50 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
51 "name": "Input dataset",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
52 "outputs": [],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
53 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
54 "left": 1887.984375,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
55 "top": 700.5625
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
56 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
57 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
58 "tool_id": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
59 "tool_state": "{\"name\": \"Protein Blast database\"}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
60 "tool_version": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
61 "type": "data_input",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
62 "uuid": "9f28fc2b-f552-4021-b6fc-ba95f6f3e8dd",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
63 "workflow_outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
64 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
65 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
66 "output_name": "output",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
67 "uuid": "8d19a7b0-6b52-46ee-be47-cce18eca9453"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
68 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
69 ]
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
70 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
71 "2": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
72 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
73 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.2.6.2",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
74 "id": 2,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
75 "input_connections": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
76 "library|input_1": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
77 "id": 0,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
78 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
79 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
80 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
81 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
82 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
83 "description": "runtime parameter for tool Bowtie2",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
84 "name": "library"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
85 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
86 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
87 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
88 "name": "Bowtie2",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
89 "outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
90 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
91 "name": "output_unaligned_reads_l",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
92 "type": "fastqsanger"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
93 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
94 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
95 "name": "output_aligned_reads_l",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
96 "type": "fastqsanger"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
97 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
98 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
99 "name": "output_aligned_reads_r",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
100 "type": "fastqsanger"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
101 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
102 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
103 "name": "output_unaligned_reads_r",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
104 "type": "fastqsanger"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
105 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
106 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
107 "name": "output",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
108 "type": "bam"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
109 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
110 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
111 "name": "output_sam",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
112 "type": "sam"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
113 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
114 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
115 "name": "mapping_stats",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
116 "type": "txt"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
117 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
118 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
119 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
120 "left": 433.484375,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
121 "top": 448.625
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
122 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
123 "post_job_actions": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
124 "DeleteIntermediatesActionoutput_unaligned_reads_l": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
125 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
126 "action_type": "DeleteIntermediatesAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
127 "output_name": "output_unaligned_reads_l"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
128 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
129 "HideDatasetActionmapping_stats": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
130 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
131 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
132 "output_name": "mapping_stats"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
133 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
134 "HideDatasetActionoutput": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
135 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
136 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
137 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
138 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
139 "HideDatasetActionoutput_aligned_reads_l": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
140 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
141 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
142 "output_name": "output_aligned_reads_l"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
143 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
144 "HideDatasetActionoutput_aligned_reads_r": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
145 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
146 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
147 "output_name": "output_aligned_reads_r"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
148 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
149 "HideDatasetActionoutput_sam": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
150 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
151 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
152 "output_name": "output_sam"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
153 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
154 "HideDatasetActionoutput_unaligned_reads_l": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
155 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
156 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
157 "output_name": "output_unaligned_reads_l"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
158 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
159 "HideDatasetActionoutput_unaligned_reads_r": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
160 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
161 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
162 "output_name": "output_unaligned_reads_r"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
163 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
164 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
165 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
166 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.2.6.2",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
167 "tool_shed_repository": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
168 "changeset_revision": "a9d4f71dbfb0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
169 "name": "bowtie2",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
170 "owner": "devteam",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
171 "tool_shed": "toolshed.g2.bx.psu.edu"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
172 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
173 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"library\": \"{\\\"aligned_file\\\": \\\"false\\\", \\\"unaligned_file\\\": \\\"true\\\", \\\"type\\\": \\\"single\\\", \\\"__current_case__\\\": 0, \\\"input_1\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"reference_genome\": \"{\\\"source\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0, \\\"index\\\": \\\"AgamP4\\\"}\", \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"save_mapping_stats\": \"\\\"false\\\"\", \"analysis_type\": \"{\\\"alignment_options\\\": {\\\"__current_case__\\\": 1, \\\"alignment_options_selector\\\": \\\"no\\\"}, \\\"effort_options\\\": {\\\"effort_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"sam_options\\\": {\\\"sam_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"other_options\\\": {\\\"other_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"scoring_options\\\": {\\\"scoring_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"analysis_type_selector\\\": \\\"full\\\", \\\"reporting_options\\\": {\\\"k\\\": \\\"1\\\", \\\"reporting_options_selector\\\": \\\"k\\\", \\\"__current_case__\\\": 1}, \\\"__current_case__\\\": 1, \\\"sam_opt\\\": \\\"true\\\", \\\"input_options\\\": {\\\"int_quals\\\": \\\"false\\\", \\\"solexa_quals\\\": \\\"false\\\", \\\"skip\\\": \\\"0\\\", \\\"input_options_selector\\\": \\\"yes\\\", \\\"qv_encoding\\\": \\\"--phred33\\\", \\\"__current_case__\\\": 0, \\\"trim3\\\": \\\"20\\\", \\\"qupto\\\": \\\"100000000\\\", \\\"trim5\\\": \\\"0\\\"}}\"}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
174 "tool_version": "2.2.6.2",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
175 "type": "tool",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
176 "uuid": "15edcf5f-9b38-4b7e-ad04-f816d1d4d126",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
177 "workflow_outputs": []
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
178 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
179 "3": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
180 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
181 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
182 "id": 3,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
183 "input_connections": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
184 "input": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
185 "id": 2,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
186 "output_name": "output_unaligned_reads_l"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
187 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
188 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
189 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
190 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
191 "description": "runtime parameter for tool FASTQ to FASTA",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
192 "name": "input"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
193 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
194 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
195 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
196 "name": "FASTQ to FASTA",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
197 "outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
198 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
199 "name": "output",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
200 "type": "fasta"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
201 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
202 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
203 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
204 "left": 774.40625,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
205 "top": 396.96875
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
206 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
207 "post_job_actions": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
208 "HideDatasetActionoutput": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
209 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
210 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
211 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
212 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
213 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
214 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
215 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
216 "tool_shed_repository": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
217 "changeset_revision": "186b8d913e6c",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
218 "name": "fastq_to_fasta",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
219 "owner": "devteam",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
220 "tool_shed": "toolshed.g2.bx.psu.edu"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
221 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
222 "tool_state": "{\"__page__\": 0, \"RENAMESEQ\": \"\\\"-r\\\"\", \"SKIPN\": \"\\\"\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"__rerun_remap_job_id__\": null}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
223 "tool_version": "1.0.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
224 "type": "tool",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
225 "uuid": "71496d9a-5490-46a7-930d-37ec45d1ccb8",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
226 "workflow_outputs": []
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
227 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
228 "4": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
229 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
230 "content_id": "toolshed.g2.bx.psu.edu/repos/mvdbeek/concatenate_multiple_datasets/cat_multiple/0.2",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
231 "id": 4,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
232 "input_connections": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
233 "input": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
234 "id": 3,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
235 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
236 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
237 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
238 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
239 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
240 "description": "runtime parameter for tool Concatenate multiple datasets",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
241 "name": "input"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
242 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
243 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
244 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
245 "name": "Concatenate multiple datasets",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
246 "outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
247 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
248 "name": "out_file1",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
249 "type": "input"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
250 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
251 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
252 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
253 "left": 1005.40625,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
254 "top": 384
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
255 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
256 "post_job_actions": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
257 "ChangeDatatypeActionout_file1": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
258 "action_arguments": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
259 "newtype": "fasta"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
260 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
261 "action_type": "ChangeDatatypeAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
262 "output_name": "out_file1"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
263 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
264 "HideDatasetActionout_file1": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
265 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
266 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
267 "output_name": "out_file1"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
268 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
269 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
270 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
271 "tool_id": "toolshed.g2.bx.psu.edu/repos/mvdbeek/concatenate_multiple_datasets/cat_multiple/0.2",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
272 "tool_shed_repository": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
273 "changeset_revision": "201c568972c3",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
274 "name": "concatenate_multiple_datasets",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
275 "owner": "mvdbeek",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
276 "tool_shed": "toolshed.g2.bx.psu.edu"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
277 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
278 "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
279 "tool_version": "0.2",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
280 "type": "tool",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
281 "uuid": "26ef2a8f-e79e-4e04-92d7-7629b56a3765",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
282 "workflow_outputs": []
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
283 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
284 "5": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
285 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
286 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_fasta_tabular_converter/fasta_tabular_converter/1.1.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
287 "id": 5,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
288 "input_connections": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
289 "switch|input": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
290 "id": 4,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
291 "output_name": "out_file1"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
292 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
293 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
294 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
295 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
296 "description": "runtime parameter for tool fasta - tabular",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
297 "name": "switch"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
298 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
299 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
300 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
301 "name": "fasta - tabular",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
302 "outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
303 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
304 "name": "output",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
305 "type": "fasta"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
306 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
307 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
308 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
309 "left": 1290.546875,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
310 "top": 377.59375
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
311 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
312 "post_job_actions": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
313 "HideDatasetActionoutput": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
314 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
315 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
316 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
317 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
318 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
319 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
320 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_fasta_tabular_converter/fasta_tabular_converter/1.1.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
321 "tool_shed_repository": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
322 "changeset_revision": "36388b666bfc",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
323 "name": "msp_fasta_tabular_converter",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
324 "owner": "drosofff",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
325 "tool_shed": "toolshed.g2.bx.psu.edu"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
326 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
327 "tool_state": "{\"__page__\": 0, \"switch\": \"{\\\"input\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0, \\\"conversionType\\\": \\\"fasta2tabular\\\"}\", \"__rerun_remap_job_id__\": null}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
328 "tool_version": "1.1.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
329 "type": "tool",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
330 "uuid": "1d78a822-0e08-4e92-a9f7-bc80166e36a1",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
331 "workflow_outputs": []
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
332 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
333 "6": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
334 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
335 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_fasta_tabular_converter/fasta_tabular_converter/1.1.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
336 "id": 6,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
337 "input_connections": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
338 "switch|input": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
339 "id": 5,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
340 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
341 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
342 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
343 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
344 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
345 "description": "runtime parameter for tool fasta - tabular",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
346 "name": "switch"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
347 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
348 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
349 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
350 "name": "fasta - tabular",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
351 "outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
352 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
353 "name": "output",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
354 "type": "fasta"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
355 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
356 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
357 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
358 "left": 1517.546875,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
359 "top": 383.578125
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
360 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
361 "post_job_actions": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
362 "HideDatasetActionoutput": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
363 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
364 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
365 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
366 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
367 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
368 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
369 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_fasta_tabular_converter/fasta_tabular_converter/1.1.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
370 "tool_shed_repository": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
371 "changeset_revision": "36388b666bfc",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
372 "name": "msp_fasta_tabular_converter",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
373 "owner": "drosofff",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
374 "tool_shed": "toolshed.g2.bx.psu.edu"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
375 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
376 "tool_state": "{\"__page__\": 0, \"switch\": \"{\\\"input\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 2, \\\"conversionType\\\": \\\"tabular2fastaweight\\\"}\", \"__rerun_remap_job_id__\": null}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
377 "tool_version": "1.1.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
378 "type": "tool",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
379 "uuid": "d6d8e36c-641a-4662-b615-0745b9d9fb55",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
380 "workflow_outputs": []
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
381 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
382 "7": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
383 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
384 "content_id": "toolshed.g2.bx.psu.edu/repos/anmoljh/trinityrnaseq/trinityrnaseq/r20140717",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
385 "id": 7,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
386 "input_connections": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
387 "inputs|input": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
388 "id": 6,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
389 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
390 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
391 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
392 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
393 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
394 "description": "runtime parameter for tool Trinity",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
395 "name": "inputs"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
396 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
397 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
398 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
399 "name": "Trinity",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
400 "outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
401 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
402 "name": "trinity_log",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
403 "type": "txt"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
404 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
405 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
406 "name": "assembled_transcripts",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
407 "type": "fasta"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
408 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
409 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
410 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
411 "left": 1664.5,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
412 "top": 552
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
413 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
414 "post_job_actions": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
415 "HideDatasetActionassembled_transcripts": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
416 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
417 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
418 "output_name": "assembled_transcripts"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
419 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
420 "HideDatasetActiontrinity_log": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
421 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
422 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
423 "output_name": "trinity_log"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
424 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
425 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
426 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
427 "tool_id": "toolshed.g2.bx.psu.edu/repos/anmoljh/trinityrnaseq/trinityrnaseq/r20140717",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
428 "tool_shed_repository": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
429 "changeset_revision": "0a576a57a9eb",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
430 "name": "trinityrnaseq",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
431 "owner": "anmoljh",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
432 "tool_shed": "toolshed.g2.bx.psu.edu"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
433 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
434 "tool_state": "{\"__page__\": 0, \"additional_params\": \"{\\\"use_additional\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"inputs\": \"{\\\"paired_or_single\\\": \\\"single\\\", \\\"input\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"path_reinforcement_distance\\\": \\\"40\\\", \\\"__current_case__\\\": 1, \\\"library_type\\\": \\\"None\\\"}\", \"__rerun_remap_job_id__\": null, \"JM\": \"\\\"10G\\\"\", \"CPU\": \"\\\"2\\\"\"}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
435 "tool_version": "r20140717",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
436 "type": "tool",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
437 "uuid": "66b333dc-801a-4df5-953a-a168a240588b",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
438 "workflow_outputs": []
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
439 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
440 "8": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
441 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
442 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/regex_find_replace/regex1/0.1.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
443 "id": 8,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
444 "input_connections": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
445 "input": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
446 "id": 7,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
447 "output_name": "assembled_transcripts"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
448 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
449 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
450 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
451 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
452 "description": "runtime parameter for tool Regex Find And Replace",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
453 "name": "input"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
454 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
455 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
456 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
457 "name": "Regex Find And Replace",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
458 "outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
459 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
460 "name": "out_file1",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
461 "type": "input"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
462 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
463 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
464 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
465 "left": 1906,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
466 "top": 437
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
467 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
468 "post_job_actions": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
469 "HideDatasetActionout_file1": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
470 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
471 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
472 "output_name": "out_file1"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
473 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
474 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
475 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
476 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/regex_find_replace/regex1/0.1.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
477 "tool_shed_repository": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
478 "changeset_revision": "9ea374bb0350",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
479 "name": "regex_find_replace",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
480 "owner": "jjohnson",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
481 "tool_shed": "toolshed.g2.bx.psu.edu"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
482 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
483 "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"checks\": \"[{\\\"__index__\\\": 0, \\\"replacement\\\": \\\">\\\\\\\\1_len=\\\\\\\\2\\\", \\\"pattern\\\": \\\">(.+) len=(\\\\\\\\d+) .+\\\"}]\", \"__page__\": 0}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
484 "tool_version": "0.1.0",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
485 "type": "tool",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
486 "uuid": "e26819fa-b301-4cc0-a2d9-228e383433d9",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
487 "workflow_outputs": []
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
488 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
489 "9": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
490 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
491 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.1",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
492 "id": 9,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
493 "input_connections": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
494 "input": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
495 "id": 8,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
496 "output_name": "out_file1"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
497 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
498 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
499 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
500 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
501 "description": "runtime parameter for tool Filter sequences by length",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
502 "name": "input"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
503 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
504 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
505 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
506 "name": "Filter sequences by length",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
507 "outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
508 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
509 "name": "output",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
510 "type": "fasta"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
511 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
512 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
513 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
514 "left": 1956.421875,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
515 "top": 294.046875
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
516 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
517 "post_job_actions": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
518 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
519 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.1",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
520 "tool_shed_repository": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
521 "changeset_revision": "c8cd0a03db49",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
522 "name": "fasta_filter_by_length",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
523 "owner": "devteam",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
524 "tool_shed": "toolshed.g2.bx.psu.edu"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
525 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
526 "tool_state": "{\"__page__\": 0, \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"max_length\": \"\\\"0\\\"\", \"min_length\": \"\\\"5000\\\"\"}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
527 "tool_version": "1.1",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
528 "type": "tool",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
529 "uuid": "db1f7d30-3b47-4030-9724-e371e0ec54a1",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
530 "workflow_outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
531 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
532 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
533 "output_name": "output",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
534 "uuid": "0b517cd3-6991-4968-91e3-894446dd6d8b"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
535 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
536 ]
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
537 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
538 "10": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
539 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
540 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.08",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
541 "id": 10,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
542 "input_connections": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
543 "db_opts|histdb": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
544 "id": 1,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
545 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
546 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
547 "query": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
548 "id": 9,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
549 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
550 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
551 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
552 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
553 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
554 "description": "runtime parameter for tool NCBI BLAST+ blastx",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
555 "name": "db_opts"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
556 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
557 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
558 "description": "runtime parameter for tool NCBI BLAST+ blastx",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
559 "name": "query"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
560 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
561 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
562 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
563 "name": "NCBI BLAST+ blastx",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
564 "outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
565 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
566 "name": "output1",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
567 "type": "tabular"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
568 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
569 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
570 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
571 "left": 2225.4375,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
572 "top": 394
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
573 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
574 "post_job_actions": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
575 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
576 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.08",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
577 "tool_shed_repository": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
578 "changeset_revision": "3034ce97dd33",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
579 "name": "ncbi_blast_plus",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
580 "owner": "devteam",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
581 "tool_shed": "toolshed.g2.bx.psu.edu"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
582 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
583 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"query_gencode\": \"\\\"1\\\"\", \"blast_type\": \"\\\"blastx\\\"\", \"query\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
584 "tool_version": "0.1.08",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
585 "type": "tool",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
586 "uuid": "b151f8e8-c81b-466a-8a31-d4b42d4b95e9",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
587 "workflow_outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
588 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
589 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
590 "output_name": "output1",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
591 "uuid": "65223b13-b6fa-45ae-a927-bb96b184bb75"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
592 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
593 ]
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
594 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
595 "11": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
596 "annotation": "",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
597 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
598 "id": 11,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
599 "input_connections": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
600 "blast": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
601 "id": 10,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
602 "output_name": "output1"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
603 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
604 "sequences": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
605 "id": 9,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
606 "output_name": "output"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
607 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
608 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
609 "inputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
610 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
611 "description": "runtime parameter for tool Parse blast output and compile hits",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
612 "name": "blast"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
613 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
614 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
615 "description": "runtime parameter for tool Parse blast output and compile hits",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
616 "name": "sequences"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
617 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
618 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
619 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
620 "name": "Parse blast output and compile hits",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
621 "outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
622 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
623 "name": "tabularOutput",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
624 "type": "tabular"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
625 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
626 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
627 "name": "fastaOutput",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
628 "type": "fasta"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
629 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
630 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
631 "name": "al_sequences",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
632 "type": "fasta"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
633 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
634 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
635 "name": "un_sequences",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
636 "type": "fasta"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
637 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
638 ],
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
639 "position": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
640 "left": 2559.53125,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
641 "top": 209.5625
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
642 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
643 "post_job_actions": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
644 "HideDatasetActional_sequences": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
645 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
646 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
647 "output_name": "al_sequences"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
648 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
649 "HideDatasetActionfastaOutput": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
650 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
651 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
652 "output_name": "fastaOutput"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
653 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
654 "HideDatasetActionun_sequences": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
655 "action_arguments": {},
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
656 "action_type": "HideDatasetAction",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
657 "output_name": "un_sequences"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
658 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
659 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
660 "tool_errors": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
661 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
662 "tool_shed_repository": {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
663 "changeset_revision": "1991c830504a",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
664 "name": "msp_blastparser_and_hits",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
665 "owner": "drosofff",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
666 "tool_shed": "toolshed.g2.bx.psu.edu"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
667 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
668 "tool_state": "{\"__page__\": 0, \"flanking\": \"\\\"5\\\"\", \"additional_filters\": \"{\\\"__current_case__\\\": 0, \\\"use_filters\\\": \\\"no\\\"}\", \"__rerun_remap_job_id__\": null, \"mode\": \"\\\"verbose\\\"\", \"sequences\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"blast\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
669 "tool_version": "2.4.3",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
670 "type": "tool",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
671 "uuid": "30288e33-ff64-4089-9b45-428027744176",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
672 "workflow_outputs": [
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
673 {
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
674 "label": null,
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
675 "output_name": "tabularOutput",
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
676 "uuid": "6b25acfc-474c-4852-b196-a14a4cf619e3"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
677 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
678 ]
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
679 }
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
680 },
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
681 "uuid": "d144300f-b9c2-4236-a83f-8777caf45291"
ba15c770fd40 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
parents:
diff changeset
682 }