annotate Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-1.ga @ 1:3d8eb2c065c7 draft

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author drosofff
date Mon, 11 Apr 2016 13:14:14 -0400
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349 "type": "fasta"
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355 },
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360 "output_name": "aligned"
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361 },
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362 "HideDatasetActionoutput": {
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363 "action_arguments": {},
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364 "action_type": "HideDatasetAction",
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366 },
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369 "newname": "Non A. gambiae sequences"
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370 },
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371 "action_type": "RenameDatasetAction",
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372 "output_name": "unaligned"
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373 }
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374 },
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378 "tool_version": "1.1.2",
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379 "type": "tool",
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382 {
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386 }
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387 ]
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388 },
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390 "annotation": "",
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394 "input": {
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396 "output_name": "unaligned"
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397 }
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398 },
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403 {
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405 "type": "tabular"
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406 },
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407 {
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408 "name": "aligned",
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409 "type": "fasta"
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410 },
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411 {
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412 "name": "unaligned",
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413 "type": "fasta"
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414 }
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415 ],
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416 "position": {
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419 },
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422 "action_arguments": {},
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424 "output_name": "aligned"
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425 },
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426 "HideDatasetActionoutput": {
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427 "action_arguments": {},
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428 "action_type": "HideDatasetAction",
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429 "output_name": "output"
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430 },
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431 "HideDatasetActionunaligned": {
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432 "action_arguments": {},
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433 "action_type": "HideDatasetAction",
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434 "output_name": "unaligned"
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435 },
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436 "RenameDatasetActionunaligned": {
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437 "action_arguments": {
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438 "newname": "unmatched Plasmodium Berghei"
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439 },
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440 "action_type": "RenameDatasetAction",
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441 "output_name": "unaligned"
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442 }
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443 },
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444 "tool_errors": null,
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445 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2",
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446 "tool_state": "{\"__page__\": 0, \"output_format\": \"\\\"tabular\\\"\", \"additional_fasta\": \"\\\"unal\\\"\", \"v_mismatches\": \"\\\"2\\\"\", \"__rerun_remap_job_id__\": null, \"input\": \"null\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"method\": \"\\\"k_option\\\"\"}",
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447 "tool_version": "1.1.2",
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448 "type": "tool",
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449 "uuid": "None",
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450 "workflow_outputs": []
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451 },
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452 "10": {
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453 "annotation": "",
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454 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2",
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493 },
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498 },
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502 },
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506 },
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510 "tool_version": "1.1.2",
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511 "type": "tool",
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514 },
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523 }
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524 },
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527 "name": "Oases_optimiser",
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528 "outputs": [
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529 {
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530 "name": "transcripts",
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531 "type": "fasta"
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532 }
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533 ],
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537 },
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539 "RenameDatasetActiontranscripts": {
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540 "action_arguments": {
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541 "newname": "Oases Contigs"
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542 },
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543 "action_type": "RenameDatasetAction",
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544 "output_name": "transcripts"
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545 }
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546 },
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547 "tool_errors": null,
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drosofff
parents:
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1003 }
4a47903bb4df planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit f6fa4bd2f176e3f4ae4b9c887113557d3c4ff209
drosofff
parents:
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1004 },
4a47903bb4df planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit f6fa4bd2f176e3f4ae4b9c887113557d3c4ff209
drosofff
parents:
diff changeset
1005 "uuid": "ac35209c-d243-403c-95c7-5500b022ae10"
4a47903bb4df planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit f6fa4bd2f176e3f4ae4b9c887113557d3c4ff209
drosofff
parents:
diff changeset
1006 }