Mercurial > repos > drosofff > metavisitor_workflows
annotate Galaxy-Workflow-Metavisitor__Trinity_test_in_Use_Case_2-2.ga @ 4:46614c7dd247 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 3db1fee84ce9679a358ea55630cac47a16256a30
author | drosofff |
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date | Sun, 16 Apr 2017 19:14:41 -0400 |
parents | ba15c770fd40 |
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rev | line source |
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ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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1 { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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2 "a_galaxy_workflow": "true", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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3 "annotation": "", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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4 "format-version": "0.1", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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5 "name": "Metavisitor: Trinity test in Use Case 2-2", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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6 "steps": { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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7 "0": { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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8 "annotation": "", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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9 "content_id": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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10 "id": 0, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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11 "input_connections": {}, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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12 "inputs": [ |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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13 { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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14 "description": "", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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15 "name": "Input Dataset Collection" |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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16 } |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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17 ], |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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18 "label": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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19 "name": "Input dataset collection", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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20 "outputs": [], |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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21 "position": { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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22 "left": 199.90625, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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23 "top": 264.59375 |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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24 }, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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25 "tool_errors": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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26 "tool_id": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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27 "tool_state": "{\"collection_type\": \"list\", \"name\": \"Input Dataset Collection\"}", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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28 "tool_version": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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29 "type": "data_collection_input", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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30 "uuid": "3b7db228-7d72-4b8a-9296-5e51ceda8cdd", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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31 "workflow_outputs": [ |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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32 { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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33 "label": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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34 "output_name": "output", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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35 "uuid": "dd803215-4fa9-4444-83df-06e42912b545" |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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36 } |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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37 ] |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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38 }, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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39 "1": { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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40 "annotation": "", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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41 "content_id": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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42 "id": 1, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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43 "input_connections": {}, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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44 "inputs": [ |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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45 { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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46 "description": "", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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47 "name": "Protein Blast database" |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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48 } |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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49 ], |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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50 "label": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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51 "name": "Input dataset", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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52 "outputs": [], |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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53 "position": { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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54 "left": 1887.984375, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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55 "top": 700.5625 |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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56 }, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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57 "tool_errors": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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58 "tool_id": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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59 "tool_state": "{\"name\": \"Protein Blast database\"}", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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60 "tool_version": null, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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61 "type": "data_input", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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62 "uuid": "9f28fc2b-f552-4021-b6fc-ba95f6f3e8dd", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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63 "workflow_outputs": [ |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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64 { |
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65 "label": null, |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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66 "output_name": "output", |
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67 "uuid": "8d19a7b0-6b52-46ee-be47-cce18eca9453" |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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68 } |
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69 ] |
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70 }, |
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71 "2": { |
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72 "annotation": "", |
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73 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.2.6.2", |
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74 "id": 2, |
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75 "input_connections": { |
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76 "library|input_1": { |
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77 "id": 0, |
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78 "output_name": "output" |
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79 } |
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80 }, |
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81 "inputs": [ |
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82 { |
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83 "description": "runtime parameter for tool Bowtie2", |
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84 "name": "library" |
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85 } |
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86 ], |
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87 "label": null, |
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88 "name": "Bowtie2", |
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89 "outputs": [ |
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90 { |
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91 "name": "output_unaligned_reads_l", |
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92 "type": "fastqsanger" |
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93 }, |
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94 { |
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95 "name": "output_aligned_reads_l", |
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96 "type": "fastqsanger" |
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97 }, |
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98 { |
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99 "name": "output_aligned_reads_r", |
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100 "type": "fastqsanger" |
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101 }, |
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102 { |
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103 "name": "output_unaligned_reads_r", |
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104 "type": "fastqsanger" |
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105 }, |
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106 { |
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107 "name": "output", |
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108 "type": "bam" |
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109 }, |
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110 { |
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111 "name": "output_sam", |
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112 "type": "sam" |
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113 }, |
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114 { |
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115 "name": "mapping_stats", |
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116 "type": "txt" |
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117 } |
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118 ], |
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119 "position": { |
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120 "left": 433.484375, |
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121 "top": 448.625 |
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122 }, |
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123 "post_job_actions": { |
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124 "DeleteIntermediatesActionoutput_unaligned_reads_l": { |
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125 "action_arguments": {}, |
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126 "action_type": "DeleteIntermediatesAction", |
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127 "output_name": "output_unaligned_reads_l" |
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128 }, |
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129 "HideDatasetActionmapping_stats": { |
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130 "action_arguments": {}, |
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131 "action_type": "HideDatasetAction", |
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132 "output_name": "mapping_stats" |
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133 }, |
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134 "HideDatasetActionoutput": { |
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135 "action_arguments": {}, |
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136 "action_type": "HideDatasetAction", |
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137 "output_name": "output" |
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138 }, |
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139 "HideDatasetActionoutput_aligned_reads_l": { |
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140 "action_arguments": {}, |
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141 "action_type": "HideDatasetAction", |
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142 "output_name": "output_aligned_reads_l" |
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143 }, |
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144 "HideDatasetActionoutput_aligned_reads_r": { |
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145 "action_arguments": {}, |
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146 "action_type": "HideDatasetAction", |
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147 "output_name": "output_aligned_reads_r" |
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148 }, |
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149 "HideDatasetActionoutput_sam": { |
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150 "action_arguments": {}, |
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151 "action_type": "HideDatasetAction", |
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152 "output_name": "output_sam" |
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153 }, |
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154 "HideDatasetActionoutput_unaligned_reads_l": { |
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155 "action_arguments": {}, |
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156 "action_type": "HideDatasetAction", |
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157 "output_name": "output_unaligned_reads_l" |
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158 }, |
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159 "HideDatasetActionoutput_unaligned_reads_r": { |
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160 "action_arguments": {}, |
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161 "action_type": "HideDatasetAction", |
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162 "output_name": "output_unaligned_reads_r" |
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163 } |
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164 }, |
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165 "tool_errors": null, |
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166 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.2.6.2", |
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167 "tool_shed_repository": { |
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168 "changeset_revision": "a9d4f71dbfb0", |
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169 "name": "bowtie2", |
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170 "owner": "devteam", |
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171 "tool_shed": "toolshed.g2.bx.psu.edu" |
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172 }, |
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173 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"library\": \"{\\\"aligned_file\\\": \\\"false\\\", \\\"unaligned_file\\\": \\\"true\\\", \\\"type\\\": \\\"single\\\", \\\"__current_case__\\\": 0, \\\"input_1\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}}\", \"reference_genome\": \"{\\\"source\\\": \\\"indexed\\\", \\\"__current_case__\\\": 0, \\\"index\\\": \\\"AgamP4\\\"}\", \"rg\": \"{\\\"rg_selector\\\": \\\"do_not_set\\\", \\\"__current_case__\\\": 3}\", \"save_mapping_stats\": \"\\\"false\\\"\", \"analysis_type\": \"{\\\"alignment_options\\\": {\\\"__current_case__\\\": 1, \\\"alignment_options_selector\\\": \\\"no\\\"}, \\\"effort_options\\\": {\\\"effort_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"sam_options\\\": {\\\"sam_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"other_options\\\": {\\\"other_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"scoring_options\\\": {\\\"scoring_options_selector\\\": \\\"no\\\", \\\"__current_case__\\\": 1}, \\\"analysis_type_selector\\\": \\\"full\\\", \\\"reporting_options\\\": {\\\"k\\\": \\\"1\\\", \\\"reporting_options_selector\\\": \\\"k\\\", \\\"__current_case__\\\": 1}, \\\"__current_case__\\\": 1, \\\"sam_opt\\\": \\\"true\\\", \\\"input_options\\\": {\\\"int_quals\\\": \\\"false\\\", \\\"solexa_quals\\\": \\\"false\\\", \\\"skip\\\": \\\"0\\\", \\\"input_options_selector\\\": \\\"yes\\\", \\\"qv_encoding\\\": \\\"--phred33\\\", \\\"__current_case__\\\": 0, \\\"trim3\\\": \\\"20\\\", \\\"qupto\\\": \\\"100000000\\\", \\\"trim5\\\": \\\"0\\\"}}\"}", |
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174 "tool_version": "2.2.6.2", |
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175 "type": "tool", |
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176 "uuid": "15edcf5f-9b38-4b7e-ad04-f816d1d4d126", |
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177 "workflow_outputs": [] |
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178 }, |
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179 "3": { |
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180 "annotation": "", |
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181 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.0", |
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182 "id": 3, |
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183 "input_connections": { |
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184 "input": { |
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185 "id": 2, |
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186 "output_name": "output_unaligned_reads_l" |
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187 } |
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188 }, |
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189 "inputs": [ |
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190 { |
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191 "description": "runtime parameter for tool FASTQ to FASTA", |
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192 "name": "input" |
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193 } |
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194 ], |
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195 "label": null, |
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196 "name": "FASTQ to FASTA", |
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197 "outputs": [ |
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198 { |
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199 "name": "output", |
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200 "type": "fasta" |
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201 } |
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202 ], |
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203 "position": { |
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204 "left": 774.40625, |
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205 "top": 396.96875 |
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206 }, |
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207 "post_job_actions": { |
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208 "HideDatasetActionoutput": { |
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209 "action_arguments": {}, |
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210 "action_type": "HideDatasetAction", |
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211 "output_name": "output" |
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212 } |
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213 }, |
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214 "tool_errors": null, |
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215 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_fasta/cshl_fastq_to_fasta/1.0.0", |
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216 "tool_shed_repository": { |
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217 "changeset_revision": "186b8d913e6c", |
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218 "name": "fastq_to_fasta", |
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219 "owner": "devteam", |
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220 "tool_shed": "toolshed.g2.bx.psu.edu" |
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221 }, |
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222 "tool_state": "{\"__page__\": 0, \"RENAMESEQ\": \"\\\"-r\\\"\", \"SKIPN\": \"\\\"\\\"\", \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"__rerun_remap_job_id__\": null}", |
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223 "tool_version": "1.0.0", |
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224 "type": "tool", |
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225 "uuid": "71496d9a-5490-46a7-930d-37ec45d1ccb8", |
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226 "workflow_outputs": [] |
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227 }, |
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228 "4": { |
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229 "annotation": "", |
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230 "content_id": "toolshed.g2.bx.psu.edu/repos/mvdbeek/concatenate_multiple_datasets/cat_multiple/0.2", |
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231 "id": 4, |
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232 "input_connections": { |
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233 "input": { |
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234 "id": 3, |
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235 "output_name": "output" |
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236 } |
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237 }, |
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238 "inputs": [ |
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239 { |
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240 "description": "runtime parameter for tool Concatenate multiple datasets", |
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241 "name": "input" |
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242 } |
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243 ], |
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244 "label": null, |
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245 "name": "Concatenate multiple datasets", |
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246 "outputs": [ |
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247 { |
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248 "name": "out_file1", |
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249 "type": "input" |
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250 } |
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251 ], |
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252 "position": { |
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253 "left": 1005.40625, |
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254 "top": 384 |
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255 }, |
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256 "post_job_actions": { |
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257 "ChangeDatatypeActionout_file1": { |
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258 "action_arguments": { |
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259 "newtype": "fasta" |
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260 }, |
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261 "action_type": "ChangeDatatypeAction", |
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262 "output_name": "out_file1" |
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263 }, |
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264 "HideDatasetActionout_file1": { |
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265 "action_arguments": {}, |
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266 "action_type": "HideDatasetAction", |
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267 "output_name": "out_file1" |
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268 } |
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269 }, |
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270 "tool_errors": null, |
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271 "tool_id": "toolshed.g2.bx.psu.edu/repos/mvdbeek/concatenate_multiple_datasets/cat_multiple/0.2", |
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272 "tool_shed_repository": { |
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273 "changeset_revision": "201c568972c3", |
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274 "name": "concatenate_multiple_datasets", |
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275 "owner": "mvdbeek", |
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276 "tool_shed": "toolshed.g2.bx.psu.edu" |
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277 }, |
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278 "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", |
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279 "tool_version": "0.2", |
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280 "type": "tool", |
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281 "uuid": "26ef2a8f-e79e-4e04-92d7-7629b56a3765", |
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282 "workflow_outputs": [] |
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283 }, |
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284 "5": { |
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285 "annotation": "", |
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286 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_fasta_tabular_converter/fasta_tabular_converter/1.1.0", |
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287 "id": 5, |
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288 "input_connections": { |
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289 "switch|input": { |
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290 "id": 4, |
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291 "output_name": "out_file1" |
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292 } |
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293 }, |
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294 "inputs": [ |
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295 { |
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296 "description": "runtime parameter for tool fasta - tabular", |
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297 "name": "switch" |
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298 } |
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299 ], |
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300 "label": null, |
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301 "name": "fasta - tabular", |
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302 "outputs": [ |
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303 { |
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304 "name": "output", |
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305 "type": "fasta" |
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306 } |
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307 ], |
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308 "position": { |
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309 "left": 1290.546875, |
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310 "top": 377.59375 |
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311 }, |
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312 "post_job_actions": { |
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313 "HideDatasetActionoutput": { |
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314 "action_arguments": {}, |
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315 "action_type": "HideDatasetAction", |
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316 "output_name": "output" |
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317 } |
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318 }, |
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319 "tool_errors": null, |
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320 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_fasta_tabular_converter/fasta_tabular_converter/1.1.0", |
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321 "tool_shed_repository": { |
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322 "changeset_revision": "36388b666bfc", |
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323 "name": "msp_fasta_tabular_converter", |
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324 "owner": "drosofff", |
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325 "tool_shed": "toolshed.g2.bx.psu.edu" |
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326 }, |
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327 "tool_state": "{\"__page__\": 0, \"switch\": \"{\\\"input\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 0, \\\"conversionType\\\": \\\"fasta2tabular\\\"}\", \"__rerun_remap_job_id__\": null}", |
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328 "tool_version": "1.1.0", |
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329 "type": "tool", |
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330 "uuid": "1d78a822-0e08-4e92-a9f7-bc80166e36a1", |
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331 "workflow_outputs": [] |
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332 }, |
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333 "6": { |
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334 "annotation": "", |
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335 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_fasta_tabular_converter/fasta_tabular_converter/1.1.0", |
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336 "id": 6, |
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337 "input_connections": { |
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338 "switch|input": { |
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339 "id": 5, |
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340 "output_name": "output" |
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341 } |
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342 }, |
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343 "inputs": [ |
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344 { |
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345 "description": "runtime parameter for tool fasta - tabular", |
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346 "name": "switch" |
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347 } |
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348 ], |
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349 "label": null, |
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350 "name": "fasta - tabular", |
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351 "outputs": [ |
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352 { |
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353 "name": "output", |
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354 "type": "fasta" |
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355 } |
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356 ], |
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357 "position": { |
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358 "left": 1517.546875, |
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359 "top": 383.578125 |
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360 }, |
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361 "post_job_actions": { |
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362 "HideDatasetActionoutput": { |
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363 "action_arguments": {}, |
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364 "action_type": "HideDatasetAction", |
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365 "output_name": "output" |
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366 } |
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367 }, |
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368 "tool_errors": null, |
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369 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_fasta_tabular_converter/fasta_tabular_converter/1.1.0", |
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370 "tool_shed_repository": { |
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371 "changeset_revision": "36388b666bfc", |
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372 "name": "msp_fasta_tabular_converter", |
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373 "owner": "drosofff", |
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374 "tool_shed": "toolshed.g2.bx.psu.edu" |
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375 }, |
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376 "tool_state": "{\"__page__\": 0, \"switch\": \"{\\\"input\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 2, \\\"conversionType\\\": \\\"tabular2fastaweight\\\"}\", \"__rerun_remap_job_id__\": null}", |
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377 "tool_version": "1.1.0", |
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378 "type": "tool", |
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379 "uuid": "d6d8e36c-641a-4662-b615-0745b9d9fb55", |
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380 "workflow_outputs": [] |
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381 }, |
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382 "7": { |
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383 "annotation": "", |
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384 "content_id": "toolshed.g2.bx.psu.edu/repos/anmoljh/trinityrnaseq/trinityrnaseq/r20140717", |
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385 "id": 7, |
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386 "input_connections": { |
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387 "inputs|input": { |
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388 "id": 6, |
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389 "output_name": "output" |
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390 } |
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391 }, |
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392 "inputs": [ |
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393 { |
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394 "description": "runtime parameter for tool Trinity", |
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395 "name": "inputs" |
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396 } |
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397 ], |
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398 "label": null, |
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399 "name": "Trinity", |
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400 "outputs": [ |
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401 { |
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402 "name": "trinity_log", |
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403 "type": "txt" |
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404 }, |
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405 { |
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406 "name": "assembled_transcripts", |
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407 "type": "fasta" |
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408 } |
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409 ], |
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410 "position": { |
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411 "left": 1664.5, |
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412 "top": 552 |
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413 }, |
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414 "post_job_actions": { |
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415 "HideDatasetActionassembled_transcripts": { |
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416 "action_arguments": {}, |
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417 "action_type": "HideDatasetAction", |
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418 "output_name": "assembled_transcripts" |
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419 }, |
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420 "HideDatasetActiontrinity_log": { |
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421 "action_arguments": {}, |
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422 "action_type": "HideDatasetAction", |
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423 "output_name": "trinity_log" |
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424 } |
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425 }, |
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426 "tool_errors": null, |
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427 "tool_id": "toolshed.g2.bx.psu.edu/repos/anmoljh/trinityrnaseq/trinityrnaseq/r20140717", |
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428 "tool_shed_repository": { |
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429 "changeset_revision": "0a576a57a9eb", |
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430 "name": "trinityrnaseq", |
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431 "owner": "anmoljh", |
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432 "tool_shed": "toolshed.g2.bx.psu.edu" |
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433 }, |
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434 "tool_state": "{\"__page__\": 0, \"additional_params\": \"{\\\"use_additional\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"inputs\": \"{\\\"paired_or_single\\\": \\\"single\\\", \\\"input\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"path_reinforcement_distance\\\": \\\"40\\\", \\\"__current_case__\\\": 1, \\\"library_type\\\": \\\"None\\\"}\", \"__rerun_remap_job_id__\": null, \"JM\": \"\\\"10G\\\"\", \"CPU\": \"\\\"2\\\"\"}", |
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435 "tool_version": "r20140717", |
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436 "type": "tool", |
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437 "uuid": "66b333dc-801a-4df5-953a-a168a240588b", |
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438 "workflow_outputs": [] |
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439 }, |
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440 "8": { |
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441 "annotation": "", |
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442 "content_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/regex_find_replace/regex1/0.1.0", |
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443 "id": 8, |
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444 "input_connections": { |
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445 "input": { |
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446 "id": 7, |
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447 "output_name": "assembled_transcripts" |
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448 } |
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449 }, |
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450 "inputs": [ |
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451 { |
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452 "description": "runtime parameter for tool Regex Find And Replace", |
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453 "name": "input" |
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454 } |
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455 ], |
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456 "label": null, |
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457 "name": "Regex Find And Replace", |
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458 "outputs": [ |
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459 { |
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460 "name": "out_file1", |
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461 "type": "input" |
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462 } |
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463 ], |
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464 "position": { |
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465 "left": 1906, |
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466 "top": 437 |
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467 }, |
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468 "post_job_actions": { |
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469 "HideDatasetActionout_file1": { |
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470 "action_arguments": {}, |
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471 "action_type": "HideDatasetAction", |
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472 "output_name": "out_file1" |
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473 } |
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474 }, |
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475 "tool_errors": null, |
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476 "tool_id": "toolshed.g2.bx.psu.edu/repos/jjohnson/regex_find_replace/regex1/0.1.0", |
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477 "tool_shed_repository": { |
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478 "changeset_revision": "9ea374bb0350", |
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479 "name": "regex_find_replace", |
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480 "owner": "jjohnson", |
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481 "tool_shed": "toolshed.g2.bx.psu.edu" |
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482 }, |
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483 "tool_state": "{\"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"checks\": \"[{\\\"__index__\\\": 0, \\\"replacement\\\": \\\">\\\\\\\\1_len=\\\\\\\\2\\\", \\\"pattern\\\": \\\">(.+) len=(\\\\\\\\d+) .+\\\"}]\", \"__page__\": 0}", |
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484 "tool_version": "0.1.0", |
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485 "type": "tool", |
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486 "uuid": "e26819fa-b301-4cc0-a2d9-228e383433d9", |
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487 "workflow_outputs": [] |
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488 }, |
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489 "9": { |
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490 "annotation": "", |
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491 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.1", |
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492 "id": 9, |
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493 "input_connections": { |
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494 "input": { |
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495 "id": 8, |
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496 "output_name": "out_file1" |
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497 } |
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498 }, |
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499 "inputs": [ |
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500 { |
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501 "description": "runtime parameter for tool Filter sequences by length", |
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502 "name": "input" |
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503 } |
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504 ], |
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505 "label": null, |
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506 "name": "Filter sequences by length", |
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507 "outputs": [ |
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508 { |
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509 "name": "output", |
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510 "type": "fasta" |
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511 } |
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512 ], |
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513 "position": { |
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diff
changeset
|
514 "left": 1956.421875, |
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parents:
diff
changeset
|
515 "top": 294.046875 |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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516 }, |
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changeset
|
517 "post_job_actions": {}, |
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diff
changeset
|
518 "tool_errors": null, |
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diff
changeset
|
519 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/fasta_filter_by_length/fasta_filter_by_length/1.1", |
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parents:
diff
changeset
|
520 "tool_shed_repository": { |
ba15c770fd40
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diff
changeset
|
521 "changeset_revision": "c8cd0a03db49", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
522 "name": "fasta_filter_by_length", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
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523 "owner": "devteam", |
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changeset
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524 "tool_shed": "toolshed.g2.bx.psu.edu" |
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525 }, |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
526 "tool_state": "{\"__page__\": 0, \"input\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__rerun_remap_job_id__\": null, \"max_length\": \"\\\"0\\\"\", \"min_length\": \"\\\"5000\\\"\"}", |
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changeset
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527 "tool_version": "1.1", |
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|
528 "type": "tool", |
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changeset
|
529 "uuid": "db1f7d30-3b47-4030-9724-e371e0ec54a1", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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530 "workflow_outputs": [ |
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|
531 { |
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|
532 "label": null, |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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533 "output_name": "output", |
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changeset
|
534 "uuid": "0b517cd3-6991-4968-91e3-894446dd6d8b" |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
535 } |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
536 ] |
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|
537 }, |
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|
538 "10": { |
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changeset
|
539 "annotation": "", |
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changeset
|
540 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.08", |
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|
541 "id": 10, |
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|
542 "input_connections": { |
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changeset
|
543 "db_opts|histdb": { |
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|
544 "id": 1, |
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|
545 "output_name": "output" |
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|
546 }, |
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|
547 "query": { |
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changeset
|
548 "id": 9, |
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549 "output_name": "output" |
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|
550 } |
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changeset
|
551 }, |
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|
552 "inputs": [ |
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changeset
|
553 { |
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diff
changeset
|
554 "description": "runtime parameter for tool NCBI BLAST+ blastx", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
555 "name": "db_opts" |
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changeset
|
556 }, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
557 { |
ba15c770fd40
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diff
changeset
|
558 "description": "runtime parameter for tool NCBI BLAST+ blastx", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
559 "name": "query" |
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changeset
|
560 } |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
561 ], |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
562 "label": null, |
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changeset
|
563 "name": "NCBI BLAST+ blastx", |
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|
564 "outputs": [ |
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changeset
|
565 { |
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changeset
|
566 "name": "output1", |
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changeset
|
567 "type": "tabular" |
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|
568 } |
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changeset
|
569 ], |
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|
570 "position": { |
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changeset
|
571 "left": 2225.4375, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
572 "top": 394 |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
573 }, |
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parents:
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changeset
|
574 "post_job_actions": {}, |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
575 "tool_errors": null, |
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|
576 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.08", |
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changeset
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577 "tool_shed_repository": { |
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changeset
|
578 "changeset_revision": "3034ce97dd33", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
579 "name": "ncbi_blast_plus", |
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580 "owner": "devteam", |
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changeset
|
581 "tool_shed": "toolshed.g2.bx.psu.edu" |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
582 }, |
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|
583 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"query_gencode\": \"\\\"1\\\"\", \"blast_type\": \"\\\"blastx\\\"\", \"query\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", |
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|
584 "tool_version": "0.1.08", |
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changeset
|
585 "type": "tool", |
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changeset
|
586 "uuid": "b151f8e8-c81b-466a-8a31-d4b42d4b95e9", |
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|
587 "workflow_outputs": [ |
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changeset
|
588 { |
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|
589 "label": null, |
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changeset
|
590 "output_name": "output1", |
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changeset
|
591 "uuid": "65223b13-b6fa-45ae-a927-bb96b184bb75" |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
592 } |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
593 ] |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
594 }, |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
595 "11": { |
ba15c770fd40
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parents:
diff
changeset
|
596 "annotation": "", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
597 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
598 "id": 11, |
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parents:
diff
changeset
|
599 "input_connections": { |
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parents:
diff
changeset
|
600 "blast": { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
601 "id": 10, |
ba15c770fd40
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parents:
diff
changeset
|
602 "output_name": "output1" |
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parents:
diff
changeset
|
603 }, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
604 "sequences": { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
605 "id": 9, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
606 "output_name": "output" |
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parents:
diff
changeset
|
607 } |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
608 }, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
609 "inputs": [ |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
610 { |
ba15c770fd40
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parents:
diff
changeset
|
611 "description": "runtime parameter for tool Parse blast output and compile hits", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
612 "name": "blast" |
ba15c770fd40
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parents:
diff
changeset
|
613 }, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
614 { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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parents:
diff
changeset
|
615 "description": "runtime parameter for tool Parse blast output and compile hits", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
616 "name": "sequences" |
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diff
changeset
|
617 } |
ba15c770fd40
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changeset
|
618 ], |
ba15c770fd40
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parents:
diff
changeset
|
619 "label": null, |
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diff
changeset
|
620 "name": "Parse blast output and compile hits", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
621 "outputs": [ |
ba15c770fd40
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changeset
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622 { |
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diff
changeset
|
623 "name": "tabularOutput", |
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624 "type": "tabular" |
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changeset
|
625 }, |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
626 { |
ba15c770fd40
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changeset
|
627 "name": "fastaOutput", |
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628 "type": "fasta" |
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changeset
|
629 }, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
630 { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
631 "name": "al_sequences", |
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diff
changeset
|
632 "type": "fasta" |
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changeset
|
633 }, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
634 { |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
635 "name": "un_sequences", |
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changeset
|
636 "type": "fasta" |
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diff
changeset
|
637 } |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
638 ], |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
639 "position": { |
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|
640 "left": 2559.53125, |
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|
641 "top": 209.5625 |
ba15c770fd40
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changeset
|
642 }, |
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changeset
|
643 "post_job_actions": { |
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changeset
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644 "HideDatasetActional_sequences": { |
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|
645 "action_arguments": {}, |
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changeset
|
646 "action_type": "HideDatasetAction", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
647 "output_name": "al_sequences" |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
648 }, |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
649 "HideDatasetActionfastaOutput": { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
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|
650 "action_arguments": {}, |
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parents:
diff
changeset
|
651 "action_type": "HideDatasetAction", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
652 "output_name": "fastaOutput" |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
653 }, |
ba15c770fd40
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diff
changeset
|
654 "HideDatasetActionun_sequences": { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
655 "action_arguments": {}, |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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diff
changeset
|
656 "action_type": "HideDatasetAction", |
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changeset
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657 "output_name": "un_sequences" |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
658 } |
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changeset
|
659 }, |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
660 "tool_errors": null, |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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661 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3", |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
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662 "tool_shed_repository": { |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
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663 "changeset_revision": "1991c830504a", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
664 "name": "msp_blastparser_and_hits", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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665 "owner": "drosofff", |
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666 "tool_shed": "toolshed.g2.bx.psu.edu" |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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667 }, |
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|
668 "tool_state": "{\"__page__\": 0, \"flanking\": \"\\\"5\\\"\", \"additional_filters\": \"{\\\"__current_case__\\\": 0, \\\"use_filters\\\": \\\"no\\\"}\", \"__rerun_remap_job_id__\": null, \"mode\": \"\\\"verbose\\\"\", \"sequences\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"blast\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\"}", |
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changeset
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669 "tool_version": "2.4.3", |
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670 "type": "tool", |
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|
671 "uuid": "30288e33-ff64-4089-9b45-428027744176", |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
672 "workflow_outputs": [ |
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|
673 { |
ba15c770fd40
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|
674 "label": null, |
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changeset
|
675 "output_name": "tabularOutput", |
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changeset
|
676 "uuid": "6b25acfc-474c-4852-b196-a14a4cf619e3" |
ba15c770fd40
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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|
677 } |
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|
678 ] |
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|
679 } |
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changeset
|
680 }, |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
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changeset
|
681 "uuid": "d144300f-b9c2-4236-a83f-8777caf45291" |
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
drosofff
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682 } |