Mercurial > repos > drosofff > metavisitor_workflows
comparison Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_1-2.ga @ 3:ba15c770fd40 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
author | drosofff |
---|---|
date | Thu, 17 Nov 2016 07:27:04 -0500 |
parents | 48b020a0d2f7 |
children | 46614c7dd247 |
comparison
equal
deleted
inserted
replaced
2:48b020a0d2f7 | 3:ba15c770fd40 |
---|---|
105 } | 105 } |
106 }, | 106 }, |
107 "tool_errors": null, | 107 "tool_errors": null, |
108 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/fetch_fasta_from_ncbi/retrieve_fasta_from_NCBI/0.9.4", | 108 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/fetch_fasta_from_ncbi/retrieve_fasta_from_NCBI/0.9.4", |
109 "tool_shed_repository": { | 109 "tool_shed_repository": { |
110 "changeset_revision": "befdb392fece", | 110 "changeset_revision": "a9d8f69d59fb", |
111 "name": "fetch_fasta_from_ncbi", | 111 "name": "fetch_fasta_from_ncbi", |
112 "owner": "drosofff", | 112 "owner": "drosofff", |
113 "tool_shed": "toolshed.g2.bx.psu.edu" | 113 "tool_shed": "toolshed.g2.bx.psu.edu" |
114 }, | 114 }, |
115 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"queryString\": \"\\\"${ncbi_guide_ID}\\\"\", \"dbname\": \"\\\"nuccore\\\"\"}", | 115 "tool_state": "{\"__page__\": 0, \"__rerun_remap_job_id__\": null, \"queryString\": \"\\\"${ncbi_guide_ID}\\\"\", \"dbname\": \"\\\"nuccore\\\"\"}", |
149 }, | 149 }, |
150 "post_job_actions": {}, | 150 "post_job_actions": {}, |
151 "tool_errors": null, | 151 "tool_errors": null, |
152 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/yac_clipper/yac/1.3.6", | 152 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/yac_clipper/yac/1.3.6", |
153 "tool_shed_repository": { | 153 "tool_shed_repository": { |
154 "changeset_revision": "91cce7c1436d", | 154 "changeset_revision": "a18edcf9c7ed", |
155 "name": "yac_clipper", | 155 "name": "yac_clipper", |
156 "owner": "drosofff", | 156 "owner": "drosofff", |
157 "tool_shed": "toolshed.g2.bx.psu.edu" | 157 "tool_shed": "toolshed.g2.bx.psu.edu" |
158 }, | 158 }, |
159 "tool_state": "{\"out_format\": \"\\\"fasta\\\"\", \"__page__\": 0, \"min\": \"\\\"18\\\"\", \"max\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"__workflow_invocation_uuid__\": \"\\\"459d9188801e11e5ae6af01fafdfc061\\\"\", \"clip_source\": \"{\\\"clip_source_list\\\": \\\"prebuilt\\\", \\\"clip_sequence\\\": \\\"CTGTAGGCACCATCAATCGT\\\", \\\"__current_case__\\\": 0}\", \"input\": \"null\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"Nmode\": \"\\\"reject\\\"\"}", | 159 "tool_state": "{\"out_format\": \"\\\"fasta\\\"\", \"__page__\": 0, \"min\": \"\\\"18\\\"\", \"max\": \"\\\"30\\\"\", \"__rerun_remap_job_id__\": null, \"__workflow_invocation_uuid__\": \"\\\"459d9188801e11e5ae6af01fafdfc061\\\"\", \"clip_source\": \"{\\\"clip_source_list\\\": \\\"prebuilt\\\", \\\"clip_sequence\\\": \\\"CTGTAGGCACCATCAATCGT\\\", \\\"__current_case__\\\": 0}\", \"input\": \"null\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"Nmode\": \"\\\"reject\\\"\"}", |
168 } | 168 } |
169 ] | 169 ] |
170 }, | 170 }, |
171 "4": { | 171 "4": { |
172 "annotation": "", | 172 "annotation": "", |
173 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.06", | 173 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.08", |
174 "id": 4, | 174 "id": 4, |
175 "input_connections": { | 175 "input_connections": { |
176 "input_file": { | 176 "input_file": { |
177 "id": 2, | 177 "id": 2, |
178 "output_name": "outfilename" | 178 "output_name": "outfilename" |
197 "action_type": "HideDatasetAction", | 197 "action_type": "HideDatasetAction", |
198 "output_name": "outfile" | 198 "output_name": "outfile" |
199 } | 199 } |
200 }, | 200 }, |
201 "tool_errors": null, | 201 "tool_errors": null, |
202 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.06", | 202 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.08", |
203 "tool_shed_repository": { | 203 "tool_shed_repository": { |
204 "changeset_revision": "577d9c12411a", | 204 "changeset_revision": "3034ce97dd33", |
205 "name": "ncbi_blast_plus", | 205 "name": "ncbi_blast_plus", |
206 "owner": "devteam", | 206 "owner": "devteam", |
207 "tool_shed": "toolshed.g2.bx.psu.edu" | 207 "tool_shed": "toolshed.g2.bx.psu.edu" |
208 }, | 208 }, |
209 "tool_state": "{\"__page__\": 0, \"mask_data_file\": \"null\", \"input_file\": \"null\", \"dbtype\": \"\\\"nucl\\\"\", \"__rerun_remap_job_id__\": null, \"hash_index\": \"\\\"true\\\"\", \"tax\": \"{\\\"__current_case__\\\": 0, \\\"taxselect\\\": \\\"\\\"}\", \"__workflow_invocation_uuid__\": \"\\\"ae5b2b58802911e5808df01fafdfc061\\\"\", \"title\": \"\\\"Blastn candidate database\\\"\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"parse_seqids\": \"\\\"false\\\"\"}", | 209 "tool_state": "{\"__page__\": 0, \"mask_data_file\": \"null\", \"input_file\": \"null\", \"dbtype\": \"\\\"nucl\\\"\", \"__rerun_remap_job_id__\": null, \"hash_index\": \"\\\"true\\\"\", \"tax\": \"{\\\"__current_case__\\\": 0, \\\"taxselect\\\": \\\"\\\"}\", \"__workflow_invocation_uuid__\": \"\\\"ae5b2b58802911e5808df01fafdfc061\\\"\", \"title\": \"\\\"Blastn candidate database\\\"\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"parse_seqids\": \"\\\"false\\\"\"}", |
210 "tool_version": "0.1.06", | 210 "tool_version": "0.1.08", |
211 "type": "tool", | 211 "type": "tool", |
212 "uuid": "ce29cdbe-653a-4d0e-b225-0d0762c28d4d", | 212 "uuid": "ce29cdbe-653a-4d0e-b225-0d0762c28d4d", |
213 "workflow_outputs": [] | 213 "workflow_outputs": [] |
214 }, | 214 }, |
215 "5": { | 215 "5": { |
263 "uuid": "6be696ec-ca89-4e64-ad39-7d0e7fb4401a", | 263 "uuid": "6be696ec-ca89-4e64-ad39-7d0e7fb4401a", |
264 "workflow_outputs": [] | 264 "workflow_outputs": [] |
265 }, | 265 }, |
266 "6": { | 266 "6": { |
267 "annotation": "", | 267 "annotation": "", |
268 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2", | 268 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2.1", |
269 "id": 6, | 269 "id": 6, |
270 "input_connections": { | 270 "input_connections": { |
271 "input": { | 271 "input": { |
272 "id": 5, | 272 "id": 5, |
273 "output_name": "out_file1" | 273 "output_name": "out_file1" |
312 "action_type": "RenameDatasetAction", | 312 "action_type": "RenameDatasetAction", |
313 "output_name": "unaligned" | 313 "output_name": "unaligned" |
314 } | 314 } |
315 }, | 315 }, |
316 "tool_errors": null, | 316 "tool_errors": null, |
317 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2", | 317 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2.1", |
318 "tool_shed_repository": { | 318 "tool_shed_repository": { |
319 "changeset_revision": "c1bfa227bbb6", | 319 "changeset_revision": "615d2550977f", |
320 "name": "msp_sr_bowtie", | 320 "name": "msp_sr_bowtie", |
321 "owner": "drosofff", | 321 "owner": "drosofff", |
322 "tool_shed": "toolshed.g2.bx.psu.edu" | 322 "tool_shed": "toolshed.g2.bx.psu.edu" |
323 }, | 323 }, |
324 "tool_state": "{\"__page__\": 0, \"output_format\": \"\\\"tabular\\\"\", \"additional_fasta\": \"\\\"unal\\\"\", \"v_mismatches\": \"\\\"2\\\"\", \"__rerun_remap_job_id__\": null, \"input\": \"null\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"indexed\\\", \\\"index\\\": \\\"dm6\\\", \\\"__current_case__\\\": 0}\", \"method\": \"\\\"k_option\\\"\"}", | 324 "tool_state": "{\"__page__\": 0, \"output_format\": \"\\\"tabular\\\"\", \"additional_fasta\": \"\\\"unal\\\"\", \"v_mismatches\": \"\\\"2\\\"\", \"__rerun_remap_job_id__\": null, \"input\": \"null\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"indexed\\\", \\\"index\\\": \\\"dm6\\\", \\\"__current_case__\\\": 0}\", \"method\": \"\\\"k_option\\\"\"}", |
325 "tool_version": "1.1.2", | 325 "tool_version": "1.1.2.1", |
326 "type": "tool", | 326 "type": "tool", |
327 "uuid": "e22c6843-8125-49d6-9dcd-546155536f78", | 327 "uuid": "e22c6843-8125-49d6-9dcd-546155536f78", |
328 "workflow_outputs": [ | 328 "workflow_outputs": [ |
329 { | 329 { |
330 "label": null, | 330 "label": null, |
385 } | 385 } |
386 ] | 386 ] |
387 }, | 387 }, |
388 "8": { | 388 "8": { |
389 "annotation": "", | 389 "annotation": "", |
390 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.06", | 390 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08", |
391 "id": 8, | 391 "id": 8, |
392 "input_connections": { | 392 "input_connections": { |
393 "db_opts|histdb": { | 393 "db_opts|histdb": { |
394 "id": 1, | 394 "id": 1, |
395 "output_name": "output" | 395 "output_name": "output" |
418 "action_type": "HideDatasetAction", | 418 "action_type": "HideDatasetAction", |
419 "output_name": "output1" | 419 "output_name": "output1" |
420 } | 420 } |
421 }, | 421 }, |
422 "tool_errors": null, | 422 "tool_errors": null, |
423 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.06", | 423 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08", |
424 "tool_shed_repository": { | 424 "tool_shed_repository": { |
425 "changeset_revision": "577d9c12411a", | 425 "changeset_revision": "3034ce97dd33", |
426 "name": "ncbi_blast_plus", | 426 "name": "ncbi_blast_plus", |
427 "owner": "devteam", | 427 "owner": "devteam", |
428 "tool_shed": "toolshed.g2.bx.psu.edu" | 428 "tool_shed": "toolshed.g2.bx.psu.edu" |
429 }, | 429 }, |
430 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"adv_opts\": \"{\\\"adv_optional_id_files_opts\\\": {\\\"__current_case__\\\": 0, \\\"adv_optional_id_files_opts_selector\\\": \\\"none\\\"}, \\\"identity_cutoff\\\": \\\"0.0\\\", \\\"adv_opts_selector\\\": \\\"advanced\\\", \\\"ungapped\\\": \\\"false\\\", \\\"filter_query\\\": \\\"true\\\", \\\"word_size\\\": \\\"0\\\", \\\"__current_case__\\\": 1, \\\"parse_deflines\\\": \\\"false\\\", \\\"qcov_hsp_perc\\\": \\\"0.0\\\", \\\"strand\\\": \\\"-strand both\\\", \\\"max_hits\\\": \\\"5\\\"}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"__workflow_invocation_uuid__\": \"\\\"4dd2fde8802311e5bcddf01fafdfc061\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"blast_type\": \"\\\"blastn\\\"\", \"query\": \"null\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", | 430 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"adv_opts\": \"{\\\"adv_optional_id_files_opts\\\": {\\\"__current_case__\\\": 0, \\\"adv_optional_id_files_opts_selector\\\": \\\"none\\\"}, \\\"identity_cutoff\\\": \\\"0.0\\\", \\\"adv_opts_selector\\\": \\\"advanced\\\", \\\"ungapped\\\": \\\"false\\\", \\\"filter_query\\\": \\\"true\\\", \\\"word_size\\\": \\\"0\\\", \\\"__current_case__\\\": 1, \\\"parse_deflines\\\": \\\"false\\\", \\\"qcov_hsp_perc\\\": \\\"0.0\\\", \\\"strand\\\": \\\"-strand both\\\", \\\"max_hits\\\": \\\"5\\\"}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"__workflow_invocation_uuid__\": \"\\\"4dd2fde8802311e5bcddf01fafdfc061\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"blast_type\": \"\\\"blastn\\\"\", \"query\": \"null\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", |
431 "tool_version": "0.1.06", | 431 "tool_version": "0.1.08", |
432 "type": "tool", | 432 "type": "tool", |
433 "uuid": "bf30a0ad-4ef9-49f0-b4c7-4aae52017748", | 433 "uuid": "bf30a0ad-4ef9-49f0-b4c7-4aae52017748", |
434 "workflow_outputs": [] | 434 "workflow_outputs": [] |
435 }, | 435 }, |
436 "9": { | 436 "9": { |
485 } | 485 } |
486 }, | 486 }, |
487 "tool_errors": null, | 487 "tool_errors": null, |
488 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3", | 488 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3", |
489 "tool_shed_repository": { | 489 "tool_shed_repository": { |
490 "changeset_revision": "6dfa79a6908a", | 490 "changeset_revision": "1991c830504a", |
491 "name": "msp_blastparser_and_hits", | 491 "name": "msp_blastparser_and_hits", |
492 "owner": "drosofff", | 492 "owner": "drosofff", |
493 "tool_shed": "toolshed.g2.bx.psu.edu" | 493 "tool_shed": "toolshed.g2.bx.psu.edu" |
494 }, | 494 }, |
495 "tool_state": "{\"__page__\": 0, \"flanking\": \"\\\"5\\\"\", \"additional_filters\": \"{\\\"filter_term_out\\\": \\\"JX220408.1\\\", \\\"filter_relativeCov\\\": \\\"0.0\\\", \\\"filter_meanScore\\\": \\\"0.0\\\", \\\"use_filters\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"filter_term_in\\\": \\\"Nora_virus\\\", \\\"filter_maxScore\\\": \\\"0.0\\\"}\", \"__rerun_remap_job_id__\": null, \"mode\": \"\\\"short\\\"\", \"sequences\": \"null\", \"blast\": \"null\"}", | 495 "tool_state": "{\"__page__\": 0, \"flanking\": \"\\\"5\\\"\", \"additional_filters\": \"{\\\"filter_term_out\\\": \\\"JX220408.1\\\", \\\"filter_relativeCov\\\": \\\"0.0\\\", \\\"filter_meanScore\\\": \\\"0.0\\\", \\\"use_filters\\\": \\\"yes\\\", \\\"__current_case__\\\": 1, \\\"filter_term_in\\\": \\\"Nora_virus\\\", \\\"filter_maxScore\\\": \\\"0.0\\\"}\", \"__rerun_remap_job_id__\": null, \"mode\": \"\\\"short\\\"\", \"sequences\": \"null\", \"blast\": \"null\"}", |
617 } | 617 } |
618 ] | 618 ] |
619 }, | 619 }, |
620 "11": { | 620 "11": { |
621 "annotation": "", | 621 "annotation": "", |
622 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.06", | 622 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08", |
623 "id": 11, | 623 "id": 11, |
624 "input_connections": { | 624 "input_connections": { |
625 "db_opts|histdb": { | 625 "db_opts|histdb": { |
626 "id": 4, | 626 "id": 4, |
627 "output_name": "outfile" | 627 "output_name": "outfile" |
650 "action_type": "HideDatasetAction", | 650 "action_type": "HideDatasetAction", |
651 "output_name": "output1" | 651 "output_name": "output1" |
652 } | 652 } |
653 }, | 653 }, |
654 "tool_errors": null, | 654 "tool_errors": null, |
655 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.06", | 655 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08", |
656 "tool_shed_repository": { | 656 "tool_shed_repository": { |
657 "changeset_revision": "577d9c12411a", | 657 "changeset_revision": "3034ce97dd33", |
658 "name": "ncbi_blast_plus", | 658 "name": "ncbi_blast_plus", |
659 "owner": "devteam", | 659 "owner": "devteam", |
660 "tool_shed": "toolshed.g2.bx.psu.edu" | 660 "tool_shed": "toolshed.g2.bx.psu.edu" |
661 }, | 661 }, |
662 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"__workflow_invocation_uuid__\": \"\\\"ae5b2b58802911e5808df01fafdfc061\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"blast_type\": \"\\\"blastn\\\"\", \"query\": \"null\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", | 662 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"__workflow_invocation_uuid__\": \"\\\"ae5b2b58802911e5808df01fafdfc061\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"blast_type\": \"\\\"blastn\\\"\", \"query\": \"null\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", |
663 "tool_version": "0.1.06", | 663 "tool_version": "0.1.08", |
664 "type": "tool", | 664 "type": "tool", |
665 "uuid": "c9f9c58a-f21d-46d2-a952-9e7b7d5bf939", | 665 "uuid": "c9f9c58a-f21d-46d2-a952-9e7b7d5bf939", |
666 "workflow_outputs": [] | 666 "workflow_outputs": [] |
667 }, | 667 }, |
668 "12": { | 668 "12": { |
704 } | 704 } |
705 }, | 705 }, |
706 "tool_errors": null, | 706 "tool_errors": null, |
707 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/blast_to_scaffold/blast2scaffold/0.9.0", | 707 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/blast_to_scaffold/blast2scaffold/0.9.0", |
708 "tool_shed_repository": { | 708 "tool_shed_repository": { |
709 "changeset_revision": "3288cc5a57e5", | 709 "changeset_revision": "81ffa74cf96e", |
710 "name": "blast_to_scaffold", | 710 "name": "blast_to_scaffold", |
711 "owner": "drosofff", | 711 "owner": "drosofff", |
712 "tool_shed": "toolshed.g2.bx.psu.edu" | 712 "tool_shed": "toolshed.g2.bx.psu.edu" |
713 }, | 713 }, |
714 "tool_state": "{\"__page__\": 0, \"guideSequence\": \"null\", \"blast_tab\": \"null\", \"__rerun_remap_job_id__\": null, \"sequences\": \"null\"}", | 714 "tool_state": "{\"__page__\": 0, \"guideSequence\": \"null\", \"blast_tab\": \"null\", \"__rerun_remap_job_id__\": null, \"sequences\": \"null\"}", |