Mercurial > repos > drosofff > metavisitor_workflows
comparison Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-2.ga @ 3:ba15c770fd40 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
author | drosofff |
---|---|
date | Thu, 17 Nov 2016 07:27:04 -0500 |
parents | 48b020a0d2f7 |
children | 46614c7dd247 |
comparison
equal
deleted
inserted
replaced
2:48b020a0d2f7 | 3:ba15c770fd40 |
---|---|
354 "uuid": "d6d8e36c-641a-4662-b615-0745b9d9fb55", | 354 "uuid": "d6d8e36c-641a-4662-b615-0745b9d9fb55", |
355 "workflow_outputs": [] | 355 "workflow_outputs": [] |
356 }, | 356 }, |
357 "7": { | 357 "7": { |
358 "annotation": "", | 358 "annotation": "", |
359 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.4", | 359 "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.5", |
360 "id": 7, | 360 "id": 7, |
361 "input_connections": { | 361 "input_connections": { |
362 "inputs_0|input": { | 362 "inputs_0|input": { |
363 "id": 6, | 363 "id": 6, |
364 "output_name": "output" | 364 "output_name": "output" |
377 "left": 1778.4375610351562, | 377 "left": 1778.4375610351562, |
378 "top": 339.0625057220459 | 378 "top": 339.0625057220459 |
379 }, | 379 }, |
380 "post_job_actions": {}, | 380 "post_job_actions": {}, |
381 "tool_errors": null, | 381 "tool_errors": null, |
382 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.4", | 382 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_oases/oasesoptimiserv/1.1.5", |
383 "tool_shed_repository": { | 383 "tool_shed_repository": { |
384 "changeset_revision": "f08d9c814ffb", | 384 "changeset_revision": "dc684e37f668", |
385 "name": "msp_oases", | 385 "name": "msp_oases", |
386 "owner": "drosofff", | 386 "owner": "drosofff", |
387 "tool_shed": "toolshed.g2.bx.psu.edu" | 387 "tool_shed": "toolshed.g2.bx.psu.edu" |
388 }, | 388 }, |
389 "tool_state": "{\"__page__\": 0, \"end_hash_length\": \"\\\"69\\\"\", \"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": null}]\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"start_hash_length\": \"\\\"25\\\"\"}", | 389 "tool_state": "{\"__page__\": 0, \"end_hash_length\": \"\\\"69\\\"\", \"inputs\": \"[{\\\"__index__\\\": 0, \\\"input\\\": null}]\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"start_hash_length\": \"\\\"25\\\"\"}", |
390 "tool_version": "1.1.4", | 390 "tool_version": "1.1.5", |
391 "type": "tool", | 391 "type": "tool", |
392 "uuid": "98ece8ec-729a-41a1-a61e-f6fcfce0e835", | 392 "uuid": "98ece8ec-729a-41a1-a61e-f6fcfce0e835", |
393 "workflow_outputs": [ | 393 "workflow_outputs": [ |
394 { | 394 { |
395 "label": null, | 395 "label": null, |
442 } | 442 } |
443 ] | 443 ] |
444 }, | 444 }, |
445 "9": { | 445 "9": { |
446 "annotation": "", | 446 "annotation": "", |
447 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.06", | 447 "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.08", |
448 "id": 9, | 448 "id": 9, |
449 "input_connections": { | 449 "input_connections": { |
450 "db_opts|histdb": { | 450 "db_opts|histdb": { |
451 "id": 1, | 451 "id": 1, |
452 "output_name": "output" | 452 "output_name": "output" |
469 "left": 2225.451416015625, | 469 "left": 2225.451416015625, |
470 "top": 313.00348472595215 | 470 "top": 313.00348472595215 |
471 }, | 471 }, |
472 "post_job_actions": {}, | 472 "post_job_actions": {}, |
473 "tool_errors": null, | 473 "tool_errors": null, |
474 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.06", | 474 "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastx_wrapper/0.1.08", |
475 "tool_shed_repository": { | 475 "tool_shed_repository": { |
476 "changeset_revision": "577d9c12411a", | 476 "changeset_revision": "3034ce97dd33", |
477 "name": "ncbi_blast_plus", | 477 "name": "ncbi_blast_plus", |
478 "owner": "devteam", | 478 "owner": "devteam", |
479 "tool_shed": "toolshed.g2.bx.psu.edu" | 479 "tool_shed": "toolshed.g2.bx.psu.edu" |
480 }, | 480 }, |
481 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"query_gencode\": \"\\\"1\\\"\", \"blast_type\": \"\\\"blastx\\\"\", \"query\": \"null\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", | 481 "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"query_gencode\": \"\\\"1\\\"\", \"blast_type\": \"\\\"blastx\\\"\", \"query\": \"null\", \"chromInfo\": \"\\\"/home/galaxy/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\"}", |
482 "tool_version": "0.1.06", | 482 "tool_version": "0.1.08", |
483 "type": "tool", | 483 "type": "tool", |
484 "uuid": "b151f8e8-c81b-466a-8a31-d4b42d4b95e9", | 484 "uuid": "b151f8e8-c81b-466a-8a31-d4b42d4b95e9", |
485 "workflow_outputs": [ | 485 "workflow_outputs": [ |
486 { | 486 { |
487 "label": null, | 487 "label": null, |
547 } | 547 } |
548 }, | 548 }, |
549 "tool_errors": null, | 549 "tool_errors": null, |
550 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3", | 550 "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_blastparser_and_hits/BlastParser_and_hits/2.4.3", |
551 "tool_shed_repository": { | 551 "tool_shed_repository": { |
552 "changeset_revision": "6dfa79a6908a", | 552 "changeset_revision": "1991c830504a", |
553 "name": "msp_blastparser_and_hits", | 553 "name": "msp_blastparser_and_hits", |
554 "owner": "drosofff", | 554 "owner": "drosofff", |
555 "tool_shed": "toolshed.g2.bx.psu.edu" | 555 "tool_shed": "toolshed.g2.bx.psu.edu" |
556 }, | 556 }, |
557 "tool_state": "{\"__page__\": 0, \"flanking\": \"\\\"5\\\"\", \"additional_filters\": \"{\\\"__current_case__\\\": 0, \\\"use_filters\\\": \\\"no\\\"}\", \"__rerun_remap_job_id__\": null, \"mode\": \"\\\"verbose\\\"\", \"sequences\": \"null\", \"blast\": \"null\"}", | 557 "tool_state": "{\"__page__\": 0, \"flanking\": \"\\\"5\\\"\", \"additional_filters\": \"{\\\"__current_case__\\\": 0, \\\"use_filters\\\": \\\"no\\\"}\", \"__rerun_remap_job_id__\": null, \"mode\": \"\\\"verbose\\\"\", \"sequences\": \"null\", \"blast\": \"null\"}", |