comparison Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_2-2.ga @ 3:ba15c770fd40 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
author drosofff
date Thu, 17 Nov 2016 07:27:04 -0500
parents 48b020a0d2f7
children 46614c7dd247
comparison
equal deleted inserted replaced
2:48b020a0d2f7 3:ba15c770fd40
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