diff Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga @ 3:ba15c770fd40 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
author drosofff
date Thu, 17 Nov 2016 07:27:04 -0500
parents 48b020a0d2f7
children
line wrap: on
line diff
--- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga	Fri May 13 05:46:40 2016 -0400
+++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga	Thu Nov 17 07:27:04 2016 -0500
@@ -228,7 +228,7 @@
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             "id": 4, 
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@@ -251,15 +251,15 @@
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             "tool_errors": null, 
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+            "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.08", 
             "tool_shed_repository": {
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+                "changeset_revision": "3034ce97dd33", 
                 "name": "ncbi_blast_plus", 
                 "owner": "devteam", 
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             }, 
             "tool_state": "{\"__page__\": 0, \"mask_data_file\": \"null\", \"title\": \"\\\"reference virus blast nucleotide database\\\"\", \"dbtype\": \"\\\"nucl\\\"\", \"__rerun_remap_job_id__\": null, \"hash_index\": \"\\\"true\\\"\", \"tax\": \"{\\\"__current_case__\\\": 0, \\\"taxselect\\\": \\\"\\\"}\", \"input_file\": \"null\", \"parse_seqids\": \"\\\"false\\\"\"}", 
-            "tool_version": "0.1.07", 
+            "tool_version": "0.1.08", 
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@@ -317,7 +317,7 @@
                 "owner": "anmoljh", 
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             }, 
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+            "tool_state": "{\"__page__\": 0, \"JM\": \"\\\"1G\\\"\", \"__rerun_remap_job_id__\": null, \"additional_params\": \"{\\\"use_additional\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"inputs\": \"{\\\"paired_or_single\\\": \\\"single\\\", \\\"input\\\": null, \\\"path_reinforcement_distance\\\": \\\"40\\\", \\\"__current_case__\\\": 1, \\\"library_type\\\": \\\"None\\\"}\", \"CPU\": \"\\\"2\\\"\"}", 
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@@ -369,7 +369,7 @@
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@@ -404,15 +404,15 @@
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             "tool_shed_repository": {
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@@ -558,7 +558,7 @@
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@@ -591,15 +591,15 @@
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