Mercurial > repos > drosofff > metavisitor_workflows
diff Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga @ 3:ba15c770fd40 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4
author | drosofff |
---|---|
date | Thu, 17 Nov 2016 07:27:04 -0500 |
parents | 48b020a0d2f7 |
children |
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--- a/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga Fri May 13 05:46:40 2016 -0400 +++ b/Galaxy-Workflow-Metavisitor__Workflow_for_Use_Case_3-3.ga Thu Nov 17 07:27:04 2016 -0500 @@ -228,7 +228,7 @@ }, "4": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.07", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.08", "id": 4, "input_connections": { "input_file": { @@ -251,15 +251,15 @@ }, "post_job_actions": {}, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.07", + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_makeblastdb/0.1.08", "tool_shed_repository": { - "changeset_revision": "7f3c448e119b", + "changeset_revision": "3034ce97dd33", "name": "ncbi_blast_plus", "owner": "devteam", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"__page__\": 0, \"mask_data_file\": \"null\", \"title\": \"\\\"reference virus blast nucleotide database\\\"\", \"dbtype\": \"\\\"nucl\\\"\", \"__rerun_remap_job_id__\": null, \"hash_index\": \"\\\"true\\\"\", \"tax\": \"{\\\"__current_case__\\\": 0, \\\"taxselect\\\": \\\"\\\"}\", \"input_file\": \"null\", \"parse_seqids\": \"\\\"false\\\"\"}", - "tool_version": "0.1.07", + "tool_version": "0.1.08", "type": "tool", "uuid": "6271cf86-2fa0-4f3c-8870-d1f315fb46b8", "workflow_outputs": [ @@ -317,7 +317,7 @@ "owner": "anmoljh", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"__page__\": 0, \"JM\": \"\\\"1G\\\"\", \"__rerun_remap_job_id__\": null, \"additional_params\": \"{\\\"use_additional\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"inputs\": \"{\\\"paired_or_single\\\": \\\"single\\\", \\\"input\\\": null, \\\"path_reinforcement_distance\\\": \\\"40\\\", \\\"__current_case__\\\": 1, \\\"library_type\\\": \\\"None\\\"}\"}", + "tool_state": "{\"__page__\": 0, \"JM\": \"\\\"1G\\\"\", \"__rerun_remap_job_id__\": null, \"additional_params\": \"{\\\"use_additional\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"inputs\": \"{\\\"paired_or_single\\\": \\\"single\\\", \\\"input\\\": null, \\\"path_reinforcement_distance\\\": \\\"40\\\", \\\"__current_case__\\\": 1, \\\"library_type\\\": \\\"None\\\"}\", \"CPU\": \"\\\"2\\\"\"}", "tool_version": "r20140717", "type": "tool", "uuid": "400add87-e5bc-470a-bc3c-6d7bbff41b78", @@ -369,7 +369,7 @@ }, "7": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08", "id": 7, "input_connections": { "db_opts|histdb": { @@ -404,15 +404,15 @@ } }, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08", "tool_shed_repository": { - "changeset_revision": "7f3c448e119b", + "changeset_revision": "3034ce97dd33", "name": "ncbi_blast_plus", "owner": "devteam", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"__page__\": 0, \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"blast_type\": \"\\\"blastn\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"query\": \"null\"}", - "tool_version": "0.1.07", + "tool_version": "0.1.08", "type": "tool", "uuid": "0e8b01bc-d919-4bc4-ba28-c2fde37de6b6", "workflow_outputs": [ @@ -558,7 +558,7 @@ }, "10": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08", "id": 10, "input_connections": { "db_opts|histdb": { @@ -591,15 +591,15 @@ } }, "tool_errors": null, - "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.07", + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/0.1.08", "tool_shed_repository": { - "changeset_revision": "7f3c448e119b", + "changeset_revision": "3034ce97dd33", "name": "ncbi_blast_plus", "owner": "devteam", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"evalue_cutoff\": \"\\\"0.001\\\"\", \"__page__\": 0, \"adv_opts\": \"{\\\"adv_opts_selector\\\": \\\"basic\\\", \\\"__current_case__\\\": 0}\", \"__rerun_remap_job_id__\": null, \"blast_type\": \"\\\"blastn\\\"\", \"db_opts\": \"{\\\"db_opts_selector\\\": \\\"histdb\\\", \\\"subject\\\": \\\"\\\", \\\"histdb\\\": null, \\\"__current_case__\\\": 1, \\\"database\\\": \\\"\\\"}\", \"output\": \"{\\\"out_format\\\": \\\"cols\\\", \\\"std_cols\\\": [\\\"qseqid\\\", \\\"sseqid\\\", \\\"pident\\\", \\\"length\\\", \\\"mismatch\\\", \\\"gapopen\\\", \\\"qstart\\\", \\\"qend\\\", \\\"sstart\\\", \\\"send\\\", \\\"evalue\\\", \\\"bitscore\\\"], \\\"ids_cols\\\": null, \\\"tax_cols\\\": null, \\\"__current_case__\\\": 2, \\\"misc_cols\\\": null, \\\"ext_cols\\\": [\\\"slen\\\"]}\", \"query\": \"null\"}", - "tool_version": "0.1.07", + "tool_version": "0.1.08", "type": "tool", "uuid": "6aad301d-b295-43af-ae9b-a1ec6f41da49", "workflow_outputs": []