diff Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_2-1,2.ga @ 3:ba15c770fd40 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/workflows commit 9e3f79e20670526453bbed9f5b028aabb1bb7ae4

--- a/Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_2-1,2.ga	Fri May 13 05:46:40 2016 -0400
+++ b/Galaxy-Workflow-Metavisitor__Workflow_for_remapping_in_Use_Cases_2-1,2.ga	Thu Nov 17 07:27:04 2016 -0500
@@ -172,7 +172,7 @@
         }, 
         "4": {
             "annotation": "", 
-            "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2", 
+            "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2.1", 
             "id": 4, 
             "input_connections": {
                 "input": {
@@ -223,15 +223,15 @@
                 }
             }, 
             "tool_errors": null, 
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2", 
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_bowtie/bowtieForSmallRNA/1.1.2.1", 
             "tool_shed_repository": {
-                "changeset_revision": "c1bfa227bbb6", 
+                "changeset_revision": "615d2550977f", 
                 "name": "msp_sr_bowtie", 
                 "owner": "drosofff", 
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             }, 
             "tool_state": "{\"__page__\": 0, \"output_format\": \"\\\"tabular\\\"\", \"additional_fasta\": \"\\\"No\\\"\", \"v_mismatches\": \"\\\"0\\\"\", \"__rerun_remap_job_id__\": null, \"input\": \"null\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"history\\\", \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"method\": \"\\\"multiple\\\"\"}", 
-            "tool_version": "1.1.2", 
+            "tool_version": "1.1.2.1", 
             "type": "tool", 
             "uuid": "7c3b7910-0490-4b69-ad32-c4ab81d01046", 
             "workflow_outputs": []
@@ -284,7 +284,7 @@
         }, 
         "6": {
             "annotation": "", 
-            "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.1.5", 
+            "content_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.2.0", 
             "id": 6, 
             "input_connections": {
                 "refGenomeSource|ownFile": {
@@ -338,15 +338,15 @@
                 }
             }, 
             "tool_errors": null, 
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.1.5", 
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/drosofff/msp_sr_readmap_and_size_histograms/Readmap/1.2.0", 
             "tool_shed_repository": {
-                "changeset_revision": "68f58363f1c6", 
+                "changeset_revision": "92898cc3ea19", 
                 "name": "msp_sr_readmap_and_size_histograms", 
                 "owner": "drosofff", 
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             }, 
             "tool_state": "{\"minquery\": \"\\\"18\\\"\", \"__page__\": 0, \"rows_per_page\": \"\\\"8\\\"\", \"yrange\": \"\\\"0\\\"\", \"title\": \"\\\"Readmaps and size distributions\\\"\", \"refGenomeSource\": \"{\\\"genomeSource\\\": \\\"history\\\", \\\"series\\\": [{\\\"__index__\\\": 0, \\\"norm\\\": \\\"1.0\\\", \\\"input\\\": null}], \\\"ownFile\\\": null, \\\"__current_case__\\\": 1}\", \"__rerun_remap_job_id__\": null, \"maxquery\": \"\\\"30\\\"\", \"xlabel\": \"\\\"Coordinates/read size\\\"\", \"ylabel\": \"\\\"Number of reads\\\"\", \"gff\": \"null\"}", 
-            "tool_version": "1.1.5", 
+            "tool_version": "1.2.0", 
             "type": "tool", 
             "uuid": "ebaf90ab-b8ea-428f-876c-8f9fabd1fbf9", 
             "workflow_outputs": [