Mercurial > repos > drosofff > msp_blastparser_and_hits
comparison BlastParser_and_hits.xml @ 9:d1c1a8c380af draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_blastparser_and_hits commit f76faf6bca008b11eb4deb3bc1ce26914af3ee87-dirty
| author | drosofff |
|---|---|
| date | Fri, 05 Feb 2016 04:41:56 -0500 |
| parents | b36a6599e67b |
| children | ddebfe3fb11a |
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| 8:b36a6599e67b | 9:d1c1a8c380af |
|---|---|
| 1 <tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.0"> | 1 <tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.1"> |
| 2 <description>for virus discovery</description> | 2 <description>for virus discovery</description> |
| 3 <requirements></requirements> | 3 <requirements></requirements> |
| 4 <command interpreter="python"> | 4 <command interpreter="python"> |
| 5 BlastParser_and_hits.py | 5 BlastParser_and_hits.py |
| 6 --sequences $sequences | 6 --sequences $sequences |
| 17 --filter_term_in "$additional_filters.filter_term_in" | 17 --filter_term_in "$additional_filters.filter_term_in" |
| 18 --filter_term_out "$additional_filters.filter_term_out" | 18 --filter_term_out "$additional_filters.filter_term_out" |
| 19 #end if | 19 #end if |
| 20 --al_sequences $al_sequences | 20 --al_sequences $al_sequences |
| 21 --un_sequences $un_sequences | 21 --un_sequences $un_sequences |
| 22 --dataset_name "$blast.element_identifier" | 22 --dataset_name $blast.name |
| 23 | 23 |
| 24 </command> | 24 </command> |
| 25 <inputs> | 25 <inputs> |
| 26 <param name="sequences" type="data" format="fasta" label="fasta sequences that have been blasted" /> | 26 <param name="sequences" type="data" format="fasta" label="fasta sequences that have been blasted" /> |
| 27 <param name="blast" type="data" format="tabular" label="The blast output you wish to parse" /> | 27 <param name="blast" type="data" format="tabular" label="The blast output you wish to parse" /> |