Mercurial > repos > drosofff > msp_blastparser_and_hits
changeset 10:ddebfe3fb11a draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_blastparser_and_hits commit 1863d04c44d7bf6386624e76263ec27e61d1e632
| author | drosofff |
|---|---|
| date | Fri, 05 Feb 2016 05:45:52 -0500 |
| parents | d1c1a8c380af |
| children | 77346ecf5a28 |
| files | BlastParser_and_hits.xml |
| diffstat | 1 files changed, 13 insertions(+), 13 deletions(-) [+] |
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--- a/BlastParser_and_hits.xml Fri Feb 05 04:41:56 2016 -0500 +++ b/BlastParser_and_hits.xml Fri Feb 05 05:45:52 2016 -0500 @@ -1,25 +1,25 @@ -<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.1"> +<tool id="BlastParser_and_hits" name="Parse blast output and compile hits" version="2.4.2"> <description>for virus discovery</description> <requirements></requirements> <command interpreter="python"> BlastParser_and_hits.py - --sequences $sequences - --blast $blast - --tabularOutput $tabularOutput - --fastaOutput $fastaOutput - --flanking $flanking - --mode $mode + --sequences "$sequences" + --blast "$blast" + --tabularOutput "$tabularOutput" + --fastaOutput "$fastaOutput" + --flanking "$flanking" + --mode "$mode" ## Additional parameters. #if $additional_filters.use_filters == "yes": - --filter_relativeCov $additional_filters.filter_relativeCov - --filter_maxScore $additional_filters.filter_maxScore - --filter_meanScore $additional_filters.filter_meanScore + --filter_relativeCov "$additional_filters.filter_relativeCov" + --filter_maxScore "$additional_filters.filter_maxScore" + --filter_meanScore "$additional_filters.filter_meanScore" --filter_term_in "$additional_filters.filter_term_in" --filter_term_out "$additional_filters.filter_term_out" #end if - --al_sequences $al_sequences - --un_sequences $un_sequences - --dataset_name $blast.name + --al_sequences "$al_sequences" + --un_sequences "$un_sequences" + --dataset_name "$blast.element_identifier" </command> <inputs>