Mercurial > repos > drosofff > msp_cap3

annotate test-data/cap3stdout.txt @ 1:ddb463fdf57e draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_cap3 commit 70fadb7e8972b1db550d0e067584930ce1ec8673
author drosofff
date Sat, 31 Oct 2015 19:15:56 -0400
parents e2ae46b16b3b
children
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1 Number of segment pairs = 342; number of pairwise comparisons = 14
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2 '+' means given segment; '-' means reverse complement
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3
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4 Overlaps Containments No. of Constraints Supporting Overlap
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5
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6 ******************* Contig 1 ********************
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7 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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8 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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9 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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10 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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11 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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12 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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13 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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14 ******************* Contig 2 ********************
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15 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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16 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+ is in gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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17 ******************* Contig 3 ********************
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18 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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19 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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20 ******************* Contig 4 ********************
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21 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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22 gi|225356593|gb|FJ150422.1|_Drosophila_A_virus_iso+
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23
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24 DETAILED DISPLAY OF CONTIGS
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25 ******************* Contig 1 ********************
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26 . : . : . : . : . : . :
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27 gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
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28 gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
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29 gi|225356593|gb|FJ15+ GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
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30 ____________________________________________________________
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31 consensus GTTGCATATTCAACCTGCCGAGCCCAGGAAGACTCAGGCGGGGGAGGCACTACATTAGGG
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32
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33 . : . : . : . : . : . :
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34 gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
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35 gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
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36 gi|225356593|gb|FJ15+ GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
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37 ____________________________________________________________
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38 consensus GTCGCAAAGCTAGACTTCTTGTATGGGATGTTGTTAACCTCCAAAATAGCTGCACAGATG
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39
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40 . : . : . : . : . : . :
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41 gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
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42 gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
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43 gi|225356593|gb|FJ15+ ACATCCTGG
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44 gi|225356593|gb|FJ15+ TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
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45 ____________________________________________________________
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46 consensus TATTCCTTAGCCAGTTTGGCAGAGGAAGACCAGGCTTCTCCCAACAGCTTCACATCCTGG
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47
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48 . : . : . : . : . : . :
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49 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
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50 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGC
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51 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
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52 gi|225356593|gb|FJ15+ GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
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53 ____________________________________________________________
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54 consensus GTATGGTGGCTGTGGGCGTAGAGCCTAACTCCAACAGGATTGGCAGCATTTGGCCGTACC
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55
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56 . : . : . : . : . : . :
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57 gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
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58 gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
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59 gi|225356593|gb|FJ15+ TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
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60 ____________________________________________________________
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61 consensus TCAGATATCCATTTAGTGAATCCTGAGAATCTCCCGCTGACCATTGCATGGACATATGCC
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62
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63 . : . : . : . : . : . :
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64 gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
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65 gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
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66 gi|225356593|gb|FJ15+ ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
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67 gi|225356593|gb|FJ15+ TACTCCTGCA
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68 ____________________________________________________________
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69 consensus ATGGCATCCTCTGCTGTATTTATATCGTGGGGAGGTGGATGGAGGTTCGATACTCCTGCA
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70
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71 . : . : . : . : . : . :
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72 gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTAC
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73 gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTAC
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74 gi|225356593|gb|FJ15+ ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
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75 gi|225356593|gb|FJ15+ TTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
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76 gi|225356593|gb|FJ15+ ACGTCCAGATTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
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77 ____________________________________________________________
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78 consensus ACGTCCAGGTTAATGAGCTCAGGTTGGGTTTTTACAATCTCCCGTCTCAAAGCTGACGTT
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79
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80 . : . : . : . : . : . :
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81 gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
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82 gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
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83 gi|225356593|gb|FJ15+ CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
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84 ____________________________________________________________
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85 consensus CTGGCTGCAGTAGTCTTATCAATCAGATTACGCTTTTCCTCCATTTCTTCTCTTTGACTG
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86
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87 . : . : . : . : . : . :
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88 gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
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89 gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
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90 gi|225356593|gb|FJ15+ TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
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91 ____________________________________________________________
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92 consensus TCCTGCAATGTGGGGAAAGGAGTCACTAGTGGGTATAAGGAAATCAAGTCTCCAAGTTCA
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93
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94 . : . : . : . : . : . :
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95 gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
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96 gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
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97 gi|225356593|gb|FJ15+ TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
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98 ____________________________________________________________
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99 consensus TCTCCAGTAGTGAAATAGCCCCCTTTAGCAGCACCCACAACAATTTGGTAGGCACTAGCT
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100
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101 . : . : . : . : . : . :
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102 gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
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103 gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
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104 gi|225356593|gb|FJ15+ CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
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105 ____________________________________________________________
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106 consensus CCAACTTTATCGGCAACAGTACCAACCTGAGAAACACCTCCAACTGAGGTAAGCCATCTA
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107
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108 . : . : . : . : . : . :
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109 gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
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110 gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
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111 gi|225356593|gb|FJ15+ ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
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112 ____________________________________________________________
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113 consensus ACGACGGCTTGAGCCATATTTGGTAGGAATTTCTCAGGGATGTCACCACTTTCTGTGATC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
114
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drosofff
parents:
diff changeset
115 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
116 gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
117 gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGT
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
118 gi|225356593|gb|FJ15+ CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGT
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
119 gi|225356593|gb|FJ15+ GTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
120 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
121 consensus CGAACTACTTTGGGTCTGGGGTTCGGTTCTGAATACTGGACTTGCTGAGGTCTAAGAGCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
122
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
123 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
124 gi|225356593|gb|FJ15+ TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
125 gi|225356593|gb|FJ15+ TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
126 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
127 consensus TCAAACACTTTGTACTCATCATTCAGATTCGCCTCAGGAGGAGGAGGGCATCCTACAACC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
128
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
129 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
130 gi|225356593|gb|FJ15+ TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
131 gi|225356593|gb|FJ15+ TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
132 ____________________________________________________________
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drosofff
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diff changeset
133 consensus TCCTTGACATCATAGTCGTTGGATTGGACTGTCAAATTTATCTGCCTCACAGCCACTCTC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
134
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drosofff
parents:
diff changeset
135 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
136 gi|225356593|gb|FJ15+ TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
137 gi|225356593|gb|FJ15+ TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
138 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
139 consensus TGCTCCCTCTTAAACTCGTCCAGGAATCCTGACAATGTGGGGAACAGATTAATCCATCCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
140
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
141 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
142 gi|225356593|gb|FJ15+ GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
143 gi|225356593|gb|FJ15+ GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
144 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
145 consensus GCTTTGTCATCCTCTCCATCTGAATAGAGGTCTAGACAGAAGTCCCGAGAGGGGAATCCT
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
146
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
147 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
148 gi|225356593|gb|FJ15+ GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
149 gi|225356593|gb|FJ15+ GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC
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drosofff
parents:
diff changeset
150 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
151 consensus GACGAATCTGGATATTCAAAGTCCTGGAGGGTTATATGTTCTGGCTTCGTTCCGGTTTGC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
152
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
153 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
154 gi|225356593|gb|FJ15+ TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
155 gi|225356593|gb|FJ15+ TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
156 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
157 consensus TCTTGCGTTTGCATGACAATAATCTCGCCGGGGATTGTGTTAACCACAGCGTGTATTGTC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
158
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
159 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
160 gi|225356593|gb|FJ15+ TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
161 gi|225356593|gb|FJ15+ TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
162 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
163 consensus TCTTCGATCCGAGGTATGCTGAATCCCATTGTTATCATTAAACCCCTCATACGGTCATAC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
164
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
165 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
166 gi|225356593|gb|FJ15+ AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
167 gi|225356593|gb|FJ15+ AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
168 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
169 consensus AGAGTTCTTTGGCGTGCCGTTCTAGATACTGCCTTTTCAAAGGGATTATCCTTCTGGCAG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
170
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
171 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
172 gi|225356593|gb|FJ15+ AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
173 gi|225356593|gb|FJ15+ AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
174 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
175 consensus AGCATCATCTCAAGAGCATCGCTCTCAGGCATTGTGGGGACATGTATCACACGGTGTCTG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
176
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
177 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
178 gi|225356593|gb|FJ15+ TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
179 gi|225356593|gb|FJ15+ TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
180 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
181 consensus TGGTACACTCCCATAATTTGTACGCCAAGAAATTTGTGGTCCGTAATTAGAC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
182
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
183 ******************* Contig 2 ********************
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
184 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
185 gi|225356593|gb|FJ15+ TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
186 gi|225356593|gb|FJ15+ TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
187 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
188 consensus TGGATTTTCATCCATTGCTGGAGGGCTTACTAGGATGGTCGACTGGATGTATGCCTGCCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
189
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
190 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
191 gi|225356593|gb|FJ15+ AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
192 gi|225356593|gb|FJ15+ AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
193 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
194 consensus AAAGCGGCGGGGACGGGTTGTCTGTTACGGTGACGATGCATGTATAACATTTTGGAGCCA
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
195
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
196 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
197 gi|225356593|gb|FJ15+ GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
198 gi|225356593|gb|FJ15+ GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
199 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
200 consensus GGGCGTCCTCTATCGGGTGGATCCAGATTTTAAACAAATGGACGGGTCCATAGATAGAGA
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
201
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
202 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
203 gi|225356593|gb|FJ15+ GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
204 gi|225356593|gb|FJ15+ GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
205 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
206 consensus GGATGCAAGAATCACCATTGAGTGGGTCCTCCACCATCTCAGAAAGGATTTAGGTGTAGA
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
207
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
208 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
209 gi|225356593|gb|FJ15+ GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
210 gi|225356593|gb|FJ15+ GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
211 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
212 consensus GGAGACCCCTGCTTTTTGGAAGACAGTTGCAGCAGTGTGGCTTGATATGGCCATTGACCC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
213
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
214 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
215 gi|225356593|gb|FJ15+ CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
216 gi|225356593|gb|FJ15+ CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
217 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
218 consensus CCACTTTATCGTGGATGGTAAAACTGTTTACAAGAAGAAGAACCCCCATGGACTCATGAC
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
219
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
220 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
221 gi|225356593|gb|FJ15+ TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
222 gi|225356593|gb|FJ15+ TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
223 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
224 consensus TGGAGTTCCAGGAACAACCCTATTTGACACTGTGAAATCTGTAATAGTCTGGAATGAAAT
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
225
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
226 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
227 gi|225356593|gb|FJ15+ GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
228 gi|225356593|gb|FJ15+ GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
229 ____________________________________________________________
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
230 consensus GTTGGATCAGGCTGGTGCAGGTTCCATAGACCTTTTAAATGAAGCTCAAGTAGTTGAATG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
231
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
diff changeset
232 . : . : . : . : . : . :
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
parents:
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233 gi|225356593|gb|FJ15+ GATGAAGAGACAAGGCTTGGTTGTCAAAGAGGGAA
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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234 gi|225356593|gb|FJ15+ GATGAAGAGACAAGGCTTAGTTGTCA
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drosofff
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235 ____________________________________________________________
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drosofff
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236 consensus GATGAAGAGACAAGGCTTAGTTGTCAAAGAGGGAA
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237
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drosofff
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238 ******************* Contig 3 ********************
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239 . : . : . : . : . : . :
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drosofff
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240 gi|225356593|gb|FJ15+ AACGTAAAACAAACGACATGGATGCATCTAACCCTATTATTTCAAGCGATAGAAGCACTG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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241 gi|225356593|gb|FJ15+ ATAGAAGCACTG
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242 ____________________________________________________________
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drosofff
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243 consensus AACGTAAAACAAACGACATGGATGCATCTAACCCTATTATTTCAAGCGATAGAAGCACTG
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drosofff
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244
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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245 . : . : . : . : . : . :
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drosofff
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246 gi|225356593|gb|FJ15+ TGAATCAGGTTTATGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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247 gi|225356593|gb|FJ15+ TGAATCAGGTTTACGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG
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drosofff
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248 ____________________________________________________________
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drosofff
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249 consensus TGAATCAGGTTTACGCGAAGATGGTGAGGAGAAAACGGCAAGATCTTGCCTATCTCCAGG
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drosofff
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250
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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251 . : . : . : . : . : . :
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drosofff
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252 gi|225356593|gb|FJ15+ AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG
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drosofff
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253 gi|225356593|gb|FJ15+ AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG
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drosofff
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254 ____________________________________________________________
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drosofff
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255 consensus AGTTGGTGAGGACAGCCCATCGAGAGATTCTCCCCCAAGGAGAACTTCTCCATGAGTCGG
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drosofff
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256
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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257 . : . : . : . : . : . :
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drosofff
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258 gi|225356593|gb|FJ15+ AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG
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drosofff
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259 gi|225356593|gb|FJ15+ AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG
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260 ____________________________________________________________
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drosofff
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261 consensus AAGCCAAACAGTATGTAGCCGAATATAAGGCTCGACTACCTGTGGTTGACACTAAGAAAG
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drosofff
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262
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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263 . : . : . : . : . : . :
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drosofff
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264 gi|225356593|gb|FJ15+ TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT
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drosofff
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265 gi|225356593|gb|FJ15+ TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT
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266 ____________________________________________________________
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drosofff
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267 consensus TTGGCGAACTGCCAACTGAGGTCTTCCAGGTAGCACTCCCAAGT
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drosofff
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268
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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269 ******************* Contig 4 ********************
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270 . : . : . : . : . : . :
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drosofff
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271 gi|225356593|gb|FJ15+ TACGGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA
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drosofff
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272 gi|225356593|gb|FJ15+ GGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA
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273 ____________________________________________________________
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274 consensus TACGGTGCCCCTAAGAGAATCGAACTCAAACTCTCCAGTTGTGTAGTAACCAGAGAGCCA
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275
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276 . : . : . : . : . : . :
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drosofff
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277 gi|225356593|gb|FJ15+ CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA
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drosofff
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278 gi|225356593|gb|FJ15+ CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA
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279 ____________________________________________________________
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280 consensus CCGAGGAGGGACGGGGTGGTGATTATGAAAAGATGATGGGTTTTGGGGAGAGGTTATACA
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281
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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282 . : . : . : . : . : . :
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drosofff
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283 gi|225356593|gb|FJ15+ ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC
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drosofff
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284 gi|225356593|gb|FJ15+ ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC
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drosofff
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285 ____________________________________________________________
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286 consensus ATTTCAAAATCTTGAACGGCCACTGGGTCTTCAGATATCACTTTGAAAGGACTGAGTGTC
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drosofff
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287
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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288 . : . : . : . : . : . :
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drosofff
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289 gi|225356593|gb|FJ15+ GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA
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drosofff
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290 gi|225356593|gb|FJ15+ GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA
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drosofff
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291 ____________________________________________________________
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drosofff
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292 consensus GTTCCATCAGGCATACCCTCAAGTTTGGTCCTAATCTTAGCTGTGTCCTTGCTGAGAGCA
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drosofff
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293
e2ae46b16b3b planemo upload for repository https://bitbucket.org/drosofff/gedtools/
drosofff
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294 . : . : . : . : . : . :
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295 gi|225356593|gb|FJ15+ ACAGTTCTTGTTA
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drosofff
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296 gi|225356593|gb|FJ15+ ACAGTTCTTGTTA
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297 ____________________________________________________________
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298 consensus ACAGTTCTTGTTA
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299