comparison oases_optimiser.xml @ 5:68ed36eed6c5 draft default tip

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_oases commit a5df655e2dae7ee5863305847b923716b2cdf661

4:dc684e37f668

<tool id="oasesoptimiserv" name="Oases_optimiser" version="1.1.5">
    <description>Auto optimise de novo RNA-seq Oases/Velvet assembly</description>
    <requirements>
        <requirement type="package" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">oases</requirement>
    </requirements>
    <command><![CDATA[
	python "$__tool_directory__"/oases_optimiser.py  "$start_hash_length" "$end_hash_length"
	#for $i in $inputs
		"${i.input}"

    <tests>
        <test>
            <param name="input" value="input.fa" ftype="fasta"/>
            <param name="start_hash_length" value="15" />
            <param name="end_hash_length" value="35" />
            <output name="transcripts" file="output.fa"/>
        </test>
    </tests>
	<help>
**Oases Optimiser Overview**

5:68ed36eed6c5

<tool id="oasesoptimiserv" name="Oases_optimiser" version="1.2.1">
    <description>Auto optimise de novo RNA-seq Oases/Velvet assembly</description>
    <requirements>
        <requirement type="package" version="0.2.09">oases</requirement>
        <requirement type="package" version="1.2.10">velvet</requirement>
    </requirements>
    <command><![CDATA[
	python "$__tool_directory__"/oases_optimiser.py  "$start_hash_length" "$end_hash_length"
	#for $i in $inputs
		"${i.input}"

    <tests>
        <test>
            <param name="input" value="input.fa" ftype="fasta"/>
            <param name="start_hash_length" value="15" />
            <param name="end_hash_length" value="35" />
            <output name="transcripts">
                <assert_contents>
                    <has_line_matching expression=">Locus_1_Transcript_1/1_Confidence_.+" />
                    <has_line_matching expression=">Locus_25_Transcript_1/1_Confidence_.+" />
                </assert_contents>
            </output>
        </test>
    </tests>
	<help>
**Oases Optimiser Overview**