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changeset 5:68ed36eed6c5 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_oases commit a5df655e2dae7ee5863305847b923716b2cdf661
author drosofff
date Sun, 16 Apr 2017 18:01:04 -0400
parents dc684e37f668
children
files README oases_optimiser.xml test-data/output.fa tool_dependencies.xml
diffstat 4 files changed, 15 insertions(+), 246 deletions(-) [+]
line wrap: on
line diff
--- a/README	Thu May 12 10:45:03 2016 -0400
+++ b/README	Sun Apr 16 18:01:04 2017 -0400
@@ -1,3 +1,9 @@
+# 15/04/2017
+The tool now uses bioconda dependencies
+        <requirement type="package" version="0.2.09">oases</requirement>
+        <requirement type="package" version="1.2.10">velvet</requirement>
+As the output is not deterministic, test search for line matching oases locus ranging in 1-25
+
 #Created 28/11/2014
 #Christophe Antoniewski, CNRS/University Pierre et Marie Curie, drosofff@gmail.com
 # inspired from the oases wrapper developped by Konrad Paszkiewicz, Exeter Sequencing Service, University of Exeter 
--- a/oases_optimiser.xml	Thu May 12 10:45:03 2016 -0400
+++ b/oases_optimiser.xml	Sun Apr 16 18:01:04 2017 -0400
@@ -1,7 +1,8 @@
-<tool id="oasesoptimiserv" name="Oases_optimiser" version="1.1.5">
+<tool id="oasesoptimiserv" name="Oases_optimiser" version="1.2.1">
     <description>Auto optimise de novo RNA-seq Oases/Velvet assembly</description>
     <requirements>
-        <requirement type="package" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">oases</requirement>
+        <requirement type="package" version="0.2.09">oases</requirement>
+        <requirement type="package" version="1.2.10">velvet</requirement>
     </requirements>
     <command><![CDATA[
 	python "$__tool_directory__"/oases_optimiser.py  "$start_hash_length" "$end_hash_length"
@@ -49,7 +50,12 @@
             <param name="input" value="input.fa" ftype="fasta"/>
             <param name="start_hash_length" value="15" />
             <param name="end_hash_length" value="35" />
-            <output name="transcripts" file="output.fa"/>
+            <output name="transcripts">
+                <assert_contents>
+                    <has_line_matching expression=">Locus_1_Transcript_1/1_Confidence_.+" />
+                    <has_line_matching expression=">Locus_25_Transcript_1/1_Confidence_.+" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
 	<help>
--- a/test-data/output.fa	Thu May 12 10:45:03 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,237 +0,0 @@
->Locus_1_Transcript_1/1_Confidence_0.000_Length_342
-TCTTAAAAATAGAGTTATCCTGAAGTTGCAACAGGCGAAGATGGGAAATAGAATCTTGAG
-TTTTTCAAGTTCAAAATTAAAGGACCAACCCATCAAAATAGCGCAAGCGAAGAGTGGAAG
-GACGAGAGTATTCCATTGTATCCCAGTGGATTTAATCTTGTTTTCGGGAGCGCTATACGG
-CCCGTACAAAGAAGCATACACAAAGGCTGGACTGAAATGCTATCATGCTGTAGGAATAGA
-TCCGAAATCAGTTGGTTGGCAACAGTTGGCTACGTATATGACGAAGCATCCTAATTATTT
-TGATGCTGATTATAAGAACTACGATAAGTACTTGCATAGGCA
->Locus_2_Transcript_1/1_Confidence_0.000_Length_1211
-GGTCTATGACCATTCTGCGGTTCCTGTAGCGCCAGTCGTCGAAACACAAGCAGAACAGCC
-GGAAGTTCCAGTATCATCAGTGGCAACGCGAAAGAACGATACGGGACATCTGGCAACAAA
-GTGGTATGATTTTGCCAAAATTAGTCTGTCAAACCCAGCTAACATGAATTGGACCACACT
-AACCATAGACCCGTACAACAATGTTACATTGTCTAGGGATGGTGAGTCGATGGTTCTACC
-GTGGAGGCGAAATGTTTGGACAACCGGATCAAAAAGTATTGGATACATCCGAACAATGGT
-TGCACAGATTAACATACCACGTCCGCCGCAGATCAGTGGAGTGCTCGAAGTTAAAGATTC
-AATCAATAATTCAAGTATTTCACTGGTTGAATTTGGAGGAAAAGTGGAAATCCCAATTAT
-TCCGAAGGTTATGAACGGACTAGCAACAACTGCTAGTTTGCCAAGGCATAGACTAAACCC
-GTGGATGAGAACCGCCGAAAGTAAGGTTGAATTGCAATATCGAATTATTGCTTTTAATCG
-AACTAGCGACATTGCTGACCTCAACGTTAGCGTTTTGTTGCGACCTGGCGATTCGCAATT
-CCAATTGCCGATGAAACCTGACAATAATGTGGATACACGTCATTTTGAGCTTGTTGAAGC
-TTTGATGTACCACTACGATAGCCTCCGAATTCGAGGAGAAGAACAGAGTCTGCCAGAAAA
-TGCACCTAATGCAGTTTCAAACCCTCAGCAGTTCATCACACCCGCAACCGCTCTAAGTGC
-CGAAGAATATAACGTGCACGAGGCGTTGGGTGAGAGTGAGGAATTGGAGCTGGATGAGTT
-TCCAGTTCTGGTGTTTAAGGGAAATGTTCCCGTTGACTCAGTGACGTCCATTCCTTTGGA
-CCTCGCAACCATATACGACTTCGCTTGGGACGGAGAACAGAATGCAATTTCTCAGAAATT
-TCAGCGTTTTGCTCATTTGATACCGAAAAGCGCAGGTGGTTTTGGCCCAGTGATTGGTAA
-TTATACTATCACGGCTAACCTCCCCACCGGTGTAGCAGGTCGTATTCTGCACAATTGTCT
-CCCAGGAGATTGTGTAGATCTAGCAGTATCGAGAATCTTTGGTTTGAAGAGCCTTCTTGG
-TATTGCAGGAACAGCAGTTTCAGCTATTGGTGGCCCACTCCTTAACGGTTTGGTTAACAC
-TGCAGCGCCTA
->Locus_3_Transcript_1/1_Confidence_0.000_Length_757
-CGAATTAAGTCGACTTGGTGATTGTGGAAGTCCAATTGTCTTGGCGTCAGGAAAGAAGGC
-AGGAAAACTGATAGGTTTTCACGGTTATCACTCTCCAAATCTACAAACGTGGTACGGAGC
-AATGTTGACTGTTGAGGACTTGGGAATCATCAACGGCGTAGAAGAACATTTTGATGACCC
-ATGGGCCAAACTTATTACACAAGGACTACCTGTCGATTTGCCAATTGGACCAGAAGTTGA
-GTATGTCGGTAATCTAATAAGACCTAGTTTACCTGTGACAAATGACTCACTAGACCATTG
-GCACAAATCACCATTTGCTGATCAATTTGAAGAACAATTAGCACCTGGTCGATTGAATCC
-GTATGATTCATATATTGAAGGAGATTTGCCAACTAATCTTGAGGGCCGAAAAAGTTTAAT
-CTTAGGCCCGAATAGTGAAATGGCAAAAACTCTTCCAGAATTGGATCAAGGAATTATCGA
-CTGGATTGTAGATCAGTTGGTGGTGGAACAAGTCGCAACTTTCAAAGCAGAAAACCTTTT
-AACGAAAGTTAGTGACGATATTGACGAAATGCTTGACTATGCCCTGAATGGAAATGTAGA
-TAATACGTATGTTAGGGGTATGGAAGTCAACAAAGCATCAGGATTACCTTGGAGTCTTTC
-AGGTAGTCCGAAAAAGAGTGACTTTATCGATGTAGATGAAGCTACTGGAGTCAGATCGTT
-TAAGGTTAATGCTAATGGAGACGCTCTTAAAAATAGA
->Locus_4_Transcript_1/1_Confidence_0.000_Length_131
-TCTCAATTTAGAGAGTTAGTAGACAAGTTAGAAACTGGCATTCTATTCCATGAAATAAAA
-TCGGTCACAAATGGAATTAGATGGTTAGGAGGAGCAGGGAACAATGGACACGTTGGAGAA
-AGAGTAAGAGT
->Locus_5_Transcript_1/1_Confidence_0.000_Length_588
-GGTGCACCGCAAGCATCTACGCAGGCGACCGATACTATGGACGTGCTGGTGAATAAGCAT
-TTAGTTAAAGTTCATTGTCTGAGTTATGAAAATTTGAATAATTTGGCTTTGAATGGAACA
-CAAGTGTTTGCTCTAGCATCCGACAATATATTGATCGTACCTGCACATGCAGCCAGACAG
-AACAAGTGGATCCGGTTTAGTCGCGCAACACAGACTGGTCATTATGGAATAGCGAAAGTC
-GATGAACGTAGAATTGATTTTACACGTGACATCGCTATAGCCGTTATTTTGACCAGAGCT
-GAAGCAGAACAAAAATTGTGCGAACTAGGTCACTCGATCCAGTTAACGAATATTAGTAAA
-GAGAAATTCCACTTCCCTCTTATTACGAAATATTTGTTAACCGCTGACCAGTCAGAAGTA
-GAATGGATGAATTGTACGACCCTACATTATTTTGCAAAGAATAGAACCGTGGGGTTAGGA
-AGAACGACATCATTCCAAGTTTCCGAATTTTTATGTGGAAACGAGTACATATCCAAAAAA
-CTGGTCGCATGCGCGCAAGGACTCCAGTCAAGTGTCGAATTAAGTCGA
->Locus_6_Transcript_1/1_Confidence_0.000_Length_365
-ATTCAAATATGATTAACAATCAAACAAACAAAAAGGGACCACAACTAGAGAGAGTACATT
-TTGGTAGTGCGCAAGTTGTGGGAAAAAGTACCAAACGACGACAACGCGGAACCAAACTTG
-ACATTGAATATACTGTTAAAAGGAACGAAGCACCAAAAGAGCAGAAATTCTTAGTTTCAG
-AAATTTTTGATGAAAAGTTGGATAAACAAATAAAATATGAGAAGAAGCAAAATCATACTT
-TTATTAAACCGAAATTAAATTTAGTTACTAGAGAAGAACAACATGTGACTAAGAAGGTTT
-TAAGAGGTAAAGAACGAGCTGCAACTCATGCTTTTATGAAGGAGATGGTTGAATCTAACA
-AGATA
->Locus_7_Transcript_1/1_Confidence_0.000_Length_137
-ATATGACATGCCCCTACGCGTTATCGCTGGCCTGTCAACCCTTGCCAAAACAACTGAAGA
-AGACGACAACACCTCAACTGGAATAGTAGTTAGTGAGGTAGGAGAGCCACAAGTGGTCAA
-CCATCCAGCATGGATTG
->Locus_8_Transcript_1/1_Confidence_0.000_Length_619
-AGTATTATTTAATACTGATGAGATTACCGTGTTAAAGGTAGACGTAGCAACCGTCACACA
-AAAACAACAGGACGTAGAACATTCACTTGTGACAATGAAAGATGAGATAGGAGAATTGCA
-CGTATCAGTGAATGCCAATGCTAACTCCATTGAGGCATTACGCACAAGAATTACCGCGCT
-AGAGATTAGAGATGTAGGACCGTGGGTTTTGAAAGACAGAATTTACAAATTCGTGATCAA
-CATGCCAAATGGAACTACTCGCTATACCACAATATACTTTTTCGCCGATGTATATTTTAG
-CACTGGAGTGAGAGCAGCACCTACAAATTCGGGAACAGCTACAAGCATATTGACGATTAC
-TTCGTTGACAACATCATATAGTTTGGCTAACGTTCCCGTTTTAAAAGGTGTACCTTATAG
-AGTCAATGGTTACTTTGCTAACGGAAATAGTACTGAAAACATAACCGGAAGCACGTCAGT
-GATTTACGACTCTATGTAAAAACCGGACATGACATGTCTATGACACGACATTAAACTGTC
-AGAACCTGTTTGGTTAACACAGAGAGATTAACCGCAAGACGAATATGCAGAATCCAACAC
-AAACCATGCATATATATGA
->Locus_9_Transcript_1/1_Confidence_0.000_Length_312
-AGCAAAAATTAGCTTATCGCAAATCCGAGGCAACATCAAAAGATCAACCTGGCTAGACGT
-GAATGATTGGATATTAGCTTTGAAGCATAAAATTTCAGGAAAAAGCTTTGCCAAACATAT
-GGATCTATATCCTAGCTCGCTAGATTCTTTCTTGCTTACACTCAAAGATTGGGAGGTTGA
-AGACCGTACAAAGTTTAACTCTATTTACAAGCAAAAAGTATTGTTTGTTCAATCTAGATT
-TTCACTTTACTGTTGGTCTCCTTTTATATCTCGTGGAACACGATTTGTGAAAGTGACTTC
-TCAATTTAGAGA
->Locus_10_Transcript_1/1_Confidence_0.000_Length_1215
-ACCCAAATGAGTTTTTACAAACACAAGGAGCTGTAAGAGTTGGCGAAATCAGAGAAAAGG
-TTGTAACTTTGAGAAATAAGTTGAACACTTTGCAAACAAAAGAACTCCGATCAGATAAAG
-TAGTAACAGAGTGTCAAAAACATCTGGCATCACTTGAAGTGCTACTTATTGAAGTTAAAG
-TGTTAGAGAACAGCAACCAAACCCGAGTAAAACCCGTAGGAGTTACCATACAAGGCGAAA
-AACAAATCGGAAAGACGAACCTCGTAGCAATCCTCTCAAGAAAAATATGCGAGTATGTTC
-AGGAACATGGCGATATTTCTTTTAGAAACGCCACTAAATGGACAACTTGGTCTAGGCAGT
-GCAGAGATGAATTTGATACAGGATACACCGGACAAGAAATAACTTACGTAGATGATGCCT
-TTCAACAAAAAGATAACAAGGATCATTTGATGTGGTTTACTTTTATTTCTAATACAGCAG
-TGGGAACAAACCAAGCTGATTTGAAACAAAAAGGTTTACCATACAGAAGTAAGTTGGTAT
-TTACGACCTGTAACAAGTTGCCGGACAAAAGCGTAACGATTGAGGATATCGAAGCATTAC
-ATGCTCGATTCCCTCATACAATTTGCTTGAGGAGGAACAAGAATAAAATGCCAAAACGAG
-GAGCGATTGACGAGAGCTATGACTGGGTCGATTTTTATTACGGACCAATGTCGAAAGCCG
-TCAGCGCTATTGGAAGCAACACGACCAGCACGCTAAAAACCATGTCTTTGAGTGAAATAG
-TGAAGATAATTGGAGATGATTTGATTATTCAAAATAATTTCTATAACTCCACTATTAAAG
-ATGTGGGAATCACCGGACAAGAACAAATGGATGGAGCGCAATTAGAAAGAAGACAACGAA
-TGCGTGAATTGAGGGATCACTTGTTGAGAATCCGCCCAGGAGACGAAAACATGCCTTTCC
-TTGACGAAACATTTGAGTTGAATAGCCGACCTATCCAGACAGATGAGAAATTTATACCGC
-TCAAAGATAACTTAGATGAAGAAGTTATGTATGGCGGTATTTCAGATCAGTTGTTAACTA
-GATTTGATAATATCATCGAAAGGAGTTTGGAGGGCTATGATGTTGAGTCGCGAGAGCTAG
-GTGTTGAACCTTTAACTACACTAAATCACGTGAGAAGTAATATGTTGAGTTATAGAGCGT
-GGAATCTCATTAATT
->Locus_11_Transcript_1/1_Confidence_0.000_Length_411
-CTAAACAAAAGATTAGGTATACTACAAAACCACCAGCAGAAGAGAAGAGGAGTATCCATT
-TCTATGGTTACAAGCCAAAAGGAATCCCTAACAAAGTTTGGTGGAATTGGGTCACCACTG
-GCACAGCTATGGACGCTTATGAAAAAGCTGACCGTTATCTGTATTACCAATTTAAACGAG
-AAATGATGGTATACAGAAATAAATGGGTCAAGTTTAGTAAGGAGTTCAATCCGTACCTAT
-CGGAACCGAAAATGGTATGGGAAGAGAATACATGGGAATATGAATATAAAACAGACATTC
-CCTACAATTTTATTCTCAAATGGCGTCAGTTAGTGCAGACCTACAAACCTAACACACTAA
-TCCAGGCTGATTGGTACAAAATCTCGCAGAAACAACAATGTTAATTGAAGC
->Locus_12_Transcript_1/1_Confidence_0.000_Length_434
-ATATATTAGAAATAACATTAACGTAATAACAGAGAAAGTTAATTTTATACGGAGAATAAT
-ATCGAACCCAACTGGAACAACGGGACGTAGAGGTGTGTTAGGGCGATGTGTAGAACAAAT
-CATAGAATATCCAACATTCTTTATCACAATGGTCTACGAACTACAGCAAATTAAGAACAA
-AAAAGATCTTATCTCGAAAATTACGATGATAAGTAGTATTCTCAAGTTACCACTTGGTAT
-TTGGGAAAGTACTGTAGGACGGATGCTAGATCGACCGGCGATAGAAGGAACAGAAGAAAT
-GTTGGAAGATGTTCTACCTATGGTAGCAATGGGATTGACGATTACAAAGACCCAAATTGG
-AGATGTTCCAGTTGAAAGTTTTCTTGTGAATTTAGACCGTAATCAAAAGGCTTGCGAAAA
-TATAATAAAACGTA
->Locus_13_Transcript_1/1_Confidence_0.000_Length_481
-CTGCAGCGCCTATCCTTAGTGGAGCAGCGCACGCCATTGGTGGAAATGTTGTAGGAGGAC
-TGGCTGACGCAGTGATCGATATCGGATCTAATTTGCTGACGCCAAAAGAAAAAGAACAAC
-CAAGCGCAAATTCAAGCGCGATTTCTGGAGATATTCCGATTTCGCGTTTTGTAGAGATGC
-TCAAGTATGTCAAGGAGAATTACCAGGATAATCCTGTGTTCCCGACGTTGCTTGTTGAAC
-CACAAAACTTCATCTCAAACGCAATGACCGCACTCAAAACAATTCCAATTGAGGTCTTTG
-CCAACATGCGCAATGTGAAAGTCGAACGAAATTTGTTCGACCGAACGGTTGTTCCAACTG
-TGAAGGAAGCTACTTTAGCTGATATTGTCATTCCTAACCATACGTATGGCTATATTCTCC
-GAGACTTTCTTCAAAACAAACGAGCGTTTCAATCTGGGACCAAACAAAATGTGTACTTTC
-A
->Locus_14_Transcript_1/1_Confidence_0.000_Length_316
-GAATCTCATTAATTCCATGTGTGTTAACAAAACAGAAACTTTCAGTGCTTGGTTAGGAAG
-GTACATCACCGAATGTGTAGAAGGAGCAGCAGAAAATCTAGTTACGACGAAAGTCAAAAT
-TAGAGTTAATCCTTTTACAGGTTTGCAATTGATCGCAGCCAAACGAATGTTGCAAGAGAA
-TAAATTGATCGATATGGATGAAATTCCTTCGACATCAGCGAATTCATATGAAACAGTTTA
-CGATCAAATCAAAAATTTCGTGAATGACGAGCTGAGTTTGATGGAAACAGATATAGTTGA
-TTTAGCTTTAGCAAAA
->Locus_15_Transcript_1/1_Confidence_0.000_Length_117
-CCAGATAAATGGGACAAAGCAAGAGCTGTTGAAGAATTAGATGCTATTGATACGTATGTA
-GTCGACTATCAGACAGTCTACAAAACCAATCGTGGTAACAAGAGTGGTAGTTATACT
->Locus_16_Transcript_1/1_Confidence_0.000_Length_213
-AATCAGTCTAAATAAAAGACATTGATTTTTCAAGTTCAATGTATAACTCTTTTTGTTCGT
-TTATTTGTTGTTTGCTCAAAGTTTCTGTTAAGAGGTCTCATAAGTATCCTGTTTACAACG
-GACCAGCATTATTCCCTTCGGCACTTCCGATACTCTACTAATCCTTAATACCAGAATCAG
-CATAATCAGCGAAGTGGTATCTCGCGCTTCTTT
->Locus_17_Transcript_1/1_Confidence_0.000_Length_120
-AAACGCTTATCTCCTCACGGGGTGTAACAATTTCATTGGTTGAACTCATCACGGTTGGCT
-GTGCCATGTTTTTATCGTCTGACTGCACAATTAGACTATCTCTTAATTCCTTAATAGAAA
->Locus_18_Transcript_1/1_Confidence_0.000_Length_432
-GATAAGCGTTTCTGCTATCTCTGAACAACTGGCATCCTTGATGGAGAGAGTTGATAAACT
-CGAGAAGATGAATGCTGTTTTGGAGGAAGAAAACAAGCAGCTAAAGAAGGAGAGAGAAGC
-GACTATTAAGTCAGTTAAGAAAGAGGTAAAGAGGACTAAACAAGAGAAGCCTCAGATTGC
-GAAGAAAACGCAACACAAGAGTTTAGGAGTAAATCTTAAAATCACCAAGACCAAAGTAAT
-TGGTCAGGAACAATGTTTGGAAATTGAAAATACTCAGCACAAGAAATTTGCTGAGAAGCC
-AAGCATGCCATCCAAAGTGAGCAAGAAGATGAAGGGACAACAATTGAAAAAGACTATTCG
-TACTTGGTATGAATTTGATCCCTCTAAGCTCGTTCAGCATCAAAAAGAAGTGTTGAACAG
-TGTTGTTACCAA
->Locus_19_Transcript_1/1_Confidence_0.000_Length_570
-GCAAACCTGATTTTCCGAGGGGCTACCCATAGTTATAAAAACTATTGGTTCAGCCAGAGT
-AACCCTTTCGGAAACGCAAAAGCTTAAAAAACCTGTTTATCGAGATTCCACTACTCCCCG
-CGTGGGGAGTCGTTTGCACAGATATTCTCAATAAATGTTAATTTTTCTCCTATAAACTAT
-AGGTATTAACTTTCAGGAAAAGTTGCAATTGCTAGCACTACGAACCCACACCCAGTGCGG
-GCTCCAAAACATCATCACACCGTCCTTTATAATCTTCTGCTAGAAAATTATAGCGACCAT
-CCTCATATTTAATGTGATTTTTTAACCATACGCGCAAACCAATTTTAAAAATTAGTTTCT
-GAGACGCGCACATGGCGAGTTTTGGATTTAATCTACTGCCTCACGGAAGGGAAAACAGTT
-TCTGCTACGTTTCGTTCCGTCCTGCGTTTACTTTCACCTAATACGATTTTGCGGGTCGTA
-GTAGGTAGCAGACCGGTGTCTGTTCGCGAAAATTCTTCCGTGGTCTCCCCACTCGAGTTT
-GTACTCAAGTAGCGTTTTACTCTCTCTATT
->Locus_20_Transcript_1/1_Confidence_0.000_Length_193
-AACTACTTTAGCTAAACCGTCAAGTTGCAGTTTTTGTTGATCGAGCTGGTTTTTTACTGC
-TGTTACTGAGGATTGAATTGACTTAATCTCAGTAACCTCGTTCTCGTCTAAAACGGCGAA
-AAGAGTGGTGTTCTGATCAAAGATCTCCTCTTTTAATGCCATAATAACGATTACAGAATT
-TTTGGAAAGTAAA
->Locus_21_Transcript_1/1_Confidence_0.000_Length_224
-TTTCCAGCTCGTATTCAACAATACTGCTAATGCTCCATTCAAGGTTCTGTTTGTACCACA
-TTTTAGCTTTTGACAAAGTTCATTGTAGTAATCTTCACCCCAAAGAGCTGCTTCGATCAA
-CTGTTCTTGCACAAGATTTACCCACACAGTTATCTGATCTTCGCGGATATCAGTCCATAC
-AAACGGTCCCTCAATAGATCGTTGTAGCAATGGAGCTAAAACCA
->Locus_22_Transcript_1/1_Confidence_0.000_Length_211
-AGAAAAAGTAAATATTCTTTGGAACCTCATTAGGCTCCAACCTCAACATGAGGTGGAGAA
-TTTTAAGGTTTACTTAGAAGATTTGCAGGCGTCCCCGCCGAAAACTGGGACAATTTGTGC
-AAAAGTAGTGAATGATATAAAAGCTGAAGTAGCTTCAAGTTATAGGCAATTTAACAATTA
-CTACACTCGTTTAACAAAAGATGGTATGCAC
->Locus_23_Transcript_1/1_Confidence_0.000_Length_245
-TGTTAATTGAAGCTTTCATTAATTCTTTGTTGCAAAATCTAGGTATCATGATGTCTTTCC
-GTGACCTAGTGGCGAGCCCATGGATATTGCTAGTAATAGCTATACCCTTGTGTGCATTTG
-CCAGTTCAGCGTCTATGGTTAGGGAGATGCTTTTCCGTCATAAAATTACAGAAAATATTT
-TAAAAGGAACAGGAGTAGAAGAATTGTTTAATCCATTCGGGATAATTATTAAATATTTCC
-TTTAT
->Locus_24_Transcript_1/1_Confidence_0.000_Length_577
-AAAAATTGAAGTTTACACTTGGCAAAGAACAAGCTGAAGGGGATAGTATCGAACATGTTA
-AAGAATTTGACGGTGATGTTAAGTTCGAAACAATTGAGAAACTGTTTGATCATATTGATG
-AACACCCTAACCTTAACATAGTAGGCTTGAATTTGATAGCACCAGAAAACCCAATTGCTA
-TCTATGCCGCAAGAGAAGAATCGTACGACTTTTCATTCTCCGAACCGCGCCCGCCTCAAT
-GGAAAAAGGTGGTAACGTTTAAGGAAGACAGTAAACGAATAATCTCTCTACAGTTGCGAG
-GAGAAGATACTGAAGATAACATCCTCGATGAGATTGAACACGCTATAAAAGTCTCACATG
-GAATGCCGTATGCTGAATGGATATTCAATGGATGGTTTAAGAAAGAGAGCAACGACAATA
-TATTATATTGTGTCGAGTTGGACCTGGTGACCGCAAAAACCCAATCAGGCCCAGTTGGAT
-GGACACGTGCTCAAACGAAGAACCTGAAAGATCTTGAAATTCAGCTAAACAAAGGCAAAC
-CGATCGATGTTAAATCAGTGGTTTTAGGTGCACCGCA
->Locus_25_Transcript_1/1_Confidence_0.000_Length_603
-TGGTCATAGACCAATTCCTGTACAAGTTTACCACCTTCGGCTGTAACTTCATTGTCAGCT
-TGTTCTTCGCCCGTAATTGGTTTAGTTGGGGGAACGGGCGGCTTTGGCACTGGAACTGGG
-ATAAAGTTCATGCCTTTTTCATTATAAGCTGACGTATCTGCATGCTTATAGCCTGTGGCT
-TTAATGTTCGCCATGCAACACCAAACGGTGATGCTGAGTGGGGTATTGACCGTTTCGTTA
-CTGTTATCTTCGATGGTTTCAATAACAATACTTCCTCCACTCTGTCCGATTCGACCCACT
-GATGTTTCTACGGTCGATAGATCGTTGCTCCAAGGAACTGAAAGTGCAATGGTTGGAGAT
-GCACTTGGCTTGAACCGAATTCCTCGTGTTACGGTTGTAGTATCAAATTCAGGAGTGTAG
-ATCTTCAGATAGATACCTGTTCCCAAAGGTGCTGGAACATGCACTATATAATAAAAATCC
-GCATGGAAATAATTATATAGTTCTAGCACCGTTTTTTGTTGGTAAGTGAAAACAGGATCT
-ACCACAAGTCGGGTTCCTACTGCTGGAGCAGAAAAGCGGCGTGGCAAGAAAGCACTAAAC
-GCA
->Locus_26_Transcript_1/1_Confidence_0.000_Length_182
-TAGTTATACTACTACAATTGATAATTGCCTGGCGAACGATATTTATGGTTTGTATGCGTG
-GGTGAAGACAACCGGCCTAAGATCACTGTGGGATTACCGACAGAATGTCTCGAGCGTCGC
-GTTTGGTGATGATATTATAAAAAGCGTTAGCGATGAGTATAAAGATAAGTATAATTATTG
-TA
->Locus_27_Transcript_1/1_Confidence_0.000_Length_151
-TATTTACTTTTTCTTCTCCTATAAGCGAGTGATACTTATAGTCCGAGTTTATGACGAGCT
-GGATCCATTCCCTGTGCAGTTCTTCGTTTATAGGGAATCCATTCTGAGGGTAACTCTTTT
-TCGGAAATTGGGCTGTATGAGCAATAACTCT
->Locus_28_Transcript_1/1_Confidence_0.000_Length_215
-TAAGAGATTCTGTCGTTGTGTTCAACGTGTCTAAGGAATCTTTCGTAGTTTGATCAAGCT
-CATTTAATGCTGTGGCAAGGGTGTTAATCTGTTTTGCCTGTTGACTTGTTGTTGTGGTTA
-ATTTATCAACTTCTGAACTCATTTCTACCAATGTTGTATTGATATTAACGAATTGTTCTT
-CATTTCGAGCTTGATTGTTGTTAACTACTTTAGCT
->Locus_29_Transcript_1/1_Confidence_0.000_Length_113
-TCAATTTTTGAAGCTTAGTAGTTGCGATGTTCTTCTGTTTGGCTCGTTTTTCACCTTTAC
-TCTGCTCTTCCCCAGCTATAGCATATTGGAAAGTTTTCACTATTGTAATAATA
--- a/tool_dependencies.xml	Thu May 12 10:45:03 2016 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="oases" version="0.2.08_7a32460a60929b510037952ae815bb6e29b68123">
-      <repository changeset_revision="76e8c94ea259" name="package_ged_oases" owner="drosofff" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-</tool_dependency>