Mercurial > repos > drosofff > msp_sr_readmap_and_size_histograms

comparison readmap.xml @ 12:076008825416 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit a91db0ffc9ffa13820088fc2756f00c741a01165
author drosofff
date Tue, 19 Dec 2017 13:06:51 -0500
parents 791edb7b7ea1
children 7234d438f495
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11:791edb7b7ea1 12:076008825416
1 <tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.2.2"> 1 <tool id="Readmap" name="Generate readmap and histograms from alignment files" version="1.2.3">
2 <description>from sRbowtie aligment</description> 2 <description>from sRbowtie aligment</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.2.0">bowtie</requirement> 4 <requirement type="package" version="1.2.0">bowtie</requirement>
5 <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement> 5 <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement>
6 <requirement type="package" version="1.11.2=py27_0">numpy</requirement> 6 <requirement type="package" version="1.11.2=py27_0">numpy</requirement>
43 #end for 43 #end for
44 #if $gff: 44 #if $gff:
45 --gff 45 --gff
46 $gff 46 $gff
47 #end if 47 #end if
48 ; Rscript $__tool_directory__/plot_size_readmap.r 48 ; Rscript '$__tool_directory__'/plot_size_readmap.r
49 --readmap_tab "$readmap_dataframe" 49 --readmap_tab "$readmap_dataframe"
50 --size_distribution_tab "$size_distribution_dataframe" 50 --size_distribution_tab "$size_distribution_dataframe"
51 --readmap_pdf "$readmap_PDF" 51 --readmap_pdf "$readmap_PDF"
52 --size_distribution_pdf "$size_PDF" 52 --size_distribution_pdf "$size_PDF"
53 --combi_pdf "$combi_PDF" 53 --combi_pdf "$combi_PDF"