Mercurial > repos > drosofff > msp_sr_size_histograms
comparison size_histogram.xml @ 3:31782dbb7d85 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_size_histograms commit 4813e8efaadd5755956bbea2069098bf6ec63e38
| author | mvdbeek |
|---|---|
| date | Sat, 09 Jul 2016 13:11:51 -0400 |
| parents | a95419680ce4 |
| children |
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| 2:a95419680ce4 | 3:31782dbb7d85 |
|---|---|
| 1 <tool id="Size_histogram" name="Generate size histograms from alignment files" version="0.9.8"> | 1 <tool id="Size_histogram" name="Generate size histograms from alignment files" version="0.9.9"> |
| 2 <description>from sRbowtie aligment</description> | 2 <description>from sRbowtie aligment</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.12.7">bowtie</requirement> | 4 <requirement type="package" version="0.12.7">bowtie</requirement> |
| 5 <requirement type="package" version="0.7.7">pysam</requirement> | 5 <requirement type="package" version="0.7.7">pysam</requirement> |
| 6 <requirement type="package" version="3.1.2">R</requirement> | 6 <requirement type="package" version="3.1.2">R</requirement> |
| 33 #for $i in $refGenomeSource.series | 33 #for $i in $refGenomeSource.series |
| 34 $i.input.ext | 34 $i.input.ext |
| 35 #end for | 35 #end for |
| 36 --label | 36 --label |
| 37 #for $i in $refGenomeSource.series | 37 #for $i in $refGenomeSource.series |
| 38 "$i.input.name" | 38 "$i.input.element_identifier" |
| 39 #end for | 39 #end for |
| 40 --normalization_factor | 40 --normalization_factor |
| 41 #for $i in $refGenomeSource.series | 41 #for $i in $refGenomeSource.series |
| 42 $i.norm | 42 $i.norm |
| 43 #end for | 43 #end for |