Mercurial > repos > drosofff > package_ged_velvet

view tool_dependencies.xml @ 0:b3e2c0f12e11 draft

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planemo upload for repository https://bitbucket.org/drosofff/gedtools/
author drosofff
date Sun, 21 Jun 2015 14:34:35 -0400
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children 517ddcce2fa4
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<?xml version="1.0"?>
<tool_dependency>
  <package name="velvet" version="1.2.10_9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3">
    <install version="1.0">
      <actions>
        <action type="shell_command">git clone git://github.com/dzerbino/velvet.git</action>
        <action type="shell_command">git reset --hard 9adf09f7ded7fedaf6b0e5e4edf9f46602e263d3</action>
        <action type="shell_command">sed -i -e "95s/cleanobj//" Makefile</action>
        <action type="shell_command">make 'MAXKMERLENGTH=70'</action>
        <action type="move_directory_files">
            <source_directory>.</source_directory>
            <destination_directory>$INSTALL_DIR</destination_directory>
        </action>
<!--        <action type="move_file">
            <source>velvetg</source>
            <destination>$INSTALL_DIR</destination>
        </action>
        <action type="move_file">
            <source>velveth</source>
            <destination>$INSTALL_DIR</destination>
        </action> -->
        <action type="set_environment">
          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
        </action>
      </actions>
    </install>
    <readme>
    </readme>
  </package>
</tool_dependency>