comparison yac.xml @ 2:91cce7c1436d draft

planemo upload for repository https://bitbucket.org/drosofff/gedtools/ commit ce185c8eaa7a15cb400b3bd0cedb56efedb0e99f

1:8a8f62b4bf27

<tool id="yac" name="Clip adapter" version="1.3.5">
    <description />
    <command interpreter="python">yac.py --input $input
                                       --output $output
                                       --output_format "$out_format"
                                       --adapter_to_clip $clip_source.clip_sequence

    </tests>
    <help>
This tool clips adapter sequences from a fastq file and outputs either a
fasta or fastq file of clipped reads with renumbered fasta/fastq headers.

By defualt clipped sequences with unknown nucleotides are kept, but 
can be discarded by setting "Accept reads containing N?" to reject.

Min size and max size filter clipped reads on their size.

Note that unclipped reads that satisfy the min and max size conditions are kept.

2:91cce7c1436d

<tool id="yac" name="Clip adapter" version="1.3.6">
    <description />
    <command interpreter="python">yac.py --input $input
                                       --output $output
                                       --output_format "$out_format"
                                       --adapter_to_clip $clip_source.clip_sequence

    </tests>
    <help>
This tool clips adapter sequences from a fastq file and outputs either a
fasta or fastq file of clipped reads with renumbered fasta/fastq headers.

By default clipped sequences with unknown nucleotides are kept, but 
can be discarded by setting "Accept reads containing N?" to reject.

Min size and max size filter clipped reads on their size.

Note that unclipped reads that satisfy the min and max size conditions are kept.