diff get_feature_info.xml @ 1:396f0f54d115 draft

planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit aaf8d501c3a92ed415fdf9293a65468c72aae984-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_feature_info.xml	Mon Dec 12 07:47:09 2016 -0500
@@ -0,0 +1,55 @@
+<tool id="get_feature_info" name="Get features by Ensembl ID" version="0.1.1">
+    <description>using REST API</description>
+    <requirements>
+        <requirement type="package" version="2.7">requests</requirement>
+    </requirements>
+    <command>
+<![CDATA[
+python $__tool_directory__/get_feature_info.py
+-e $expand
+-f $format_selector
+-i "$input"
+-s $species_selector
+> "$output"
+]]>
+    </command>
+
+    <inputs>
+    <param name="input" type="data" format="txt" label="List of Ensembl IDs" help="Max 1000 IDs" />
+    <param name="species_selector" type="select" label="Select species">
+        <option value="ensembl" selected="true">Vertebrates</option>
+        <option value="ensemblgenomes">Other species</option>
+    </param>
+    <param name="expand" type="boolean" truevalue="1" falsevalue="0" label="Expand the search to include any connected features" help="For example, if the object is a gene, its transcripts, translations and exons will be returned as well" />
+    <param name="format_selector" type="select" label="Output format">
+        <option value="full" selected="true">Full</option>
+        <option value="condensed">Condensed</option>
+    </param>
+    </inputs>
+
+    <outputs>
+        <data name="output" format="json" label="$(tool.name) on ${on_string}" />
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="input" ftype="txt" value="input.txt" />
+            <param name="expand" value="false" />
+            <output name="outputFile" file="out.json" />
+        </test>
+    </tests>
+
+    <help>
+<![CDATA[
+**What it does**
+
+Retrieve feature information in JSON format from Ensembl using its REST API.
+
+Uses the `"POST lookup/id"`_ API endpoint.
+
+.. _"POST lookup/id": http://rest.ensembl.org/documentation/info/lookup_post
+]]>
+    </help>
+    <citations>
+    </citations>
+</tool>