comparison get_genetree.py @ 2:4b7261f484bb draft

planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/Ensembl-REST commit 099d38157cec200f0a343579ca9babcd8acb266f

1:e5dd4bd78bbc

# A simple tool to connect to the Ensembl server and retrieve genetree using
# the Ensembl REST API.
import optparse
from urlparse import urljoin

import requests

parser = optparse.OptionParser()
parser.add_option('--id_type', type='choice', default='gene_id',
                  choices=['gene_id', 'gene_tree_id'], help='Input type')
parser.add_option('-i', '--input', help='Ensembl ID')

r = requests.get(urljoin(server, '/'.join([ext, options.input])), params=params, headers=headers)

if not r.ok:
    r.raise_for_status()

print r.text

2:4b7261f484bb

# A simple tool to connect to the Ensembl server and retrieve genetree using
# the Ensembl REST API.
from __future__ import print_function

import optparse

import requests
from six.moves.urllib.parse import urljoin

parser = optparse.OptionParser()
parser.add_option('--id_type', type='choice', default='gene_id',
                  choices=['gene_id', 'gene_tree_id'], help='Input type')
parser.add_option('-i', '--input', help='Ensembl ID')

r = requests.get(urljoin(server, '/'.join([ext, options.input])), params=params, headers=headers)

if not r.ok:
    r.raise_for_status()

print(r.text)