Mercurial > repos > earlhaminst > ensembl_longest_cds_per_gene

comparison ensembl_longest_cds_per_gene.xml @ 1:a07680f3033a draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ensembl_longest_cds_per_gene commit c1b5d458dcd1256516916ac5476e02a0ff3398de
author earlhaminst
date Tue, 07 Mar 2017 11:12:55 -0500
parents 4dba69135845
children 6cf9f7f6509c
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0:4dba69135845 1:a07680f3033a
14 <param name="input" ftype="fasta" value="Mus_musculus.GRCm38.cds.first100.fa" /> 14 <param name="input" ftype="fasta" value="Mus_musculus.GRCm38.cds.first100.fa" />
15 <output name="output" file="Mus_musculus.GRCm38.cds.longest.fa" /> 15 <output name="output" file="Mus_musculus.GRCm38.cds.longest.fa" />
16 </test> 16 </test>
17 </tests> 17 </tests>
18 <help><![CDATA[ 18 <help><![CDATA[
19 This tool filters a CDS FASTA file from Ensembl only the longest CDS sequence for each gene. 19 This tool filters a CDS FASTA file from Ensembl retaining only the longest CDS sequence for each gene.
20 20
21 The headers of the input CDS FASTA file are expected to be of the following format:: 21 The headers of the input CDS FASTA file are expected to be of the following format::
22 22
23 >ENSMUST00000177965.1 cds chromosome:GRCm38:12:113456720:113456736:-1 gene:ENSMUSG00000094057.1 gene_biotype:IG_D_gene transcript_biotype:IG_D_gene gene_symbol:Ighd2-7 description:immunoglobulin heavy diversity 2-7 [Source:MGI Symbol;Acc:MGI:4439866] 23 >ENSMUST00000177965.1 cds chromosome:GRCm38:12:113456720:113456736:-1 gene:ENSMUSG00000094057.1 gene_biotype:IG_D_gene transcript_biotype:IG_D_gene gene_symbol:Ighd2-7 description:immunoglobulin heavy diversity 2-7 [Source:MGI Symbol;Acc:MGI:4439866]
24 24