Mercurial > repos > earlhaminst > ete
annotate test-data/lineage-full.txt @ 5:817031b8486d draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit b97aee603b9acf29981719160e963a1efe2946d0
author | earlhaminst |
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date | Thu, 10 May 2018 06:15:17 -0400 |
parents | 87b6de3ef63e |
children | f1eca1158f21 |
rev | line source |
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4
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
1 #species/taxid kingdom family |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
2 Latimeria chalumnae Metazoa Coelacanthidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
3 Xenopus tropicalis Metazoa Pipidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
4 Ornithorhynchus anatinus Metazoa Ornithorhynchidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
5 Macropus eugenii Metazoa Macropodidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
6 Sarcophilus harrisii Metazoa Dasyuridae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
7 Monodelphis domestica Metazoa Didelphidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
8 Echinops telfairi Metazoa Tenrecidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
9 Procavia capensis Metazoa Procaviidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
10 Loxodonta africana Metazoa Elephantidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
11 Dasypus novemcinctus Metazoa Dasypodidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
12 Choloepus hoffmanni Metazoa Megalonychidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
13 Ochotona princeps Metazoa Ochotonidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
14 Oryctolagus cuniculus Metazoa Leporidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
15 Cavia porcellus Metazoa Caviidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
16 Ictidomys tridecemlineatus Metazoa Sciuridae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
17 Dipodomys ordii Metazoa Heteromyidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
18 Rattus norvegicus Metazoa Muridae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
19 Mus musculus Metazoa Muridae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
20 Tupaia belangeri Metazoa Tupaiidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
21 Otolemur garnettii Metazoa Galagidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
22 Microcebus murinus Metazoa Cheirogaleidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
23 Tarsius syrichta Metazoa Tarsiidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
24 Callithrix jacchus Metazoa Cebidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
25 Chlorocebus sabaeus Metazoa Cercopithecidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
26 Papio anubis Metazoa Cercopithecidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
27 Macaca mulatta Metazoa Cercopithecidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
28 Nomascus leucogenys Metazoa Hylobatidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
29 Pongo abelii Metazoa Hominidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
30 Gorilla gorilla gorilla Metazoa Hominidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
31 Pan troglodytes Metazoa Hominidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
32 Homo sapiens Metazoa Hominidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
33 Sorex araneus Metazoa Soricidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
34 Erinaceus europaeus Metazoa Erinaceidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
35 Pteropus vampyrus Metazoa Pteropodidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
36 Myotis lucifugus Metazoa Vespertilionidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
37 Felis catus Metazoa Felidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
38 Canis lupus familiaris Metazoa Canidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
39 Mustela putorius furo Metazoa Mustelidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
40 Ailuropoda melanoleuca Metazoa Ursidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
41 Equus caballus Metazoa Equidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
42 Vicugna pacos Metazoa Camelidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
43 Sus scrofa Metazoa Suidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
44 Tursiops truncatus Metazoa Delphinidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
45 Ovis aries Metazoa Bovidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
46 Bos taurus Metazoa Bovidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
47 Anolis carolinensis Metazoa Dactyloidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
48 Pelodiscus sinensis Metazoa Trionychidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
49 Taeniopygia guttata Metazoa Estrildidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
50 Ficedula albicollis Metazoa Muscicapidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
51 Anas platyrhynchos Metazoa Anatidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
52 Meleagris gallopavo Metazoa Phasianidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
53 Gallus gallus Metazoa Phasianidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
54 Lepisosteus oculatus Metazoa Lepisosteidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
55 Danio rerio Metazoa Cyprinidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
56 Astyanax mexicanus Metazoa Characidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
57 Gadus morhua Metazoa Gadidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
58 Oreochromis niloticus Metazoa Cichlidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
59 Poecilia formosa Metazoa Poeciliidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
60 Xiphophorus maculatus Metazoa Poeciliidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
61 Gasterosteus aculeatus Metazoa Gasterosteidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
62 Tetraodon nigroviridis Metazoa Tetraodontidae |
87b6de3ef63e
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit 41e40314a9b25a9f3c06a13422d367b68334f593
earlhaminst
parents:
2
diff
changeset
|
63 Takifugu rubripes Metazoa Tetraodontidae |