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comparison ete_lineage_generator.xml @ 3:077021c45b96 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/ete commit a22e605b871c2185e98d89598aebb2fa3a82bb8f
author earlhaminst
date Mon, 12 Mar 2018 12:51:48 -0400
parents 03c10736e497
children 87b6de3ef63e
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2:03c10736e497 3:077021c45b96
113 <param name="levels" value="full" /> 113 <param name="levels" value="full" />
114 <output name="outputFile" file="lineage-full.txt" /> 114 <output name="outputFile" file="lineage-full.txt" />
115 </test> 115 </test>
116 </tests> 116 </tests>
117 <help><![CDATA[ 117 <help><![CDATA[
118 Generates a table with lineage information for a list of species (also taxids and arbitrary taxons are accepted) using the .. _ETE Toolkit: http://etetoolkit.org/ 118 Generates a table with lineage information for a list of species (also taxids and arbitrary taxons are accepted) using the `ETE Toolkit`_.
119
120 .. _ETE Toolkit: http://etetoolkit.org/
119 121
120 **Input** 122 **Input**
121 123
122 - *Species file* a single column tabular file 124 - *Species file* a single column tabular file
123 - *(ETE3) Taxonomy Database* a sqlite database that has been created by ETE from the NCBI taxonomy dump 125 - *(ETE3) Taxonomy Database* a sqlite database that has been created by ETE from the NCBI taxonomy dump