Mercurial > repos > earlhaminst > ete
comparison ete_init_taxdb.xml @ 16:e4d5d9a69c9d draft default tip
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/ete commit a0d7ab86b86bb764e457767bf8e8bc29868d0cbb
author | earlhaminst |
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date | Mon, 10 Mar 2025 23:28:17 +0000 |
parents | 1e85af7a29c4 |
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15:1e85af7a29c4 | 16:e4d5d9a69c9d |
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1 <tool id="ete_init_taxdb" name="ETE taxa DB generator" version="@VERSION@"> | 1 <tool id="ete_init_taxdb" name="ETE taxa DB generator" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> |
2 <description>generates the ETE sqlite DB from the NCBI taxdump.tar.gz</description> | 2 <description>generates the ETE sqlite DB from the NCBI taxdump.tar.gz</description> |
3 <macros> | 3 <macros> |
4 <import>ete_macros.xml</import> | 4 <import>ete_macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="bio_tools"/> | 6 <expand macro="bio_tools"/> |
27 <outputs> | 27 <outputs> |
28 <data name="database" format="sqlite" label="${tool.name} on ${on_string}" /> | 28 <data name="database" format="sqlite" label="${tool.name} on ${on_string}" /> |
29 </outputs> | 29 </outputs> |
30 <tests> | 30 <tests> |
31 <test> | 31 <test> |
32 <param name="latest" value="local" /> | 32 <conditional name="latestcond"> |
33 <param name="taxdump" ftype="tar" value="taxdump.tar.gz" /> | 33 <param name="latest" value="local" /> |
34 <param name="taxdump" ftype="tar" value="taxdump.tar.gz" /> | |
35 </conditional> | |
34 <output name="database" file="taxdump.sqlite" compare="sim_size" /> | 36 <output name="database" file="taxdump.sqlite" compare="sim_size" /> |
35 </test> | 37 </test> |
36 </tests> | 38 </tests> |
37 <help><![CDATA[ | 39 <help><![CDATA[ |
38 Generates the ETE sqlite data base from the NCBI taxdump.tar.gz using the `ETE Toolkit`_. | 40 Generates the ETE sqlite data base from the NCBI taxdump.tar.gz using the `ETE Toolkit`_. |