Mercurial > repos > earlhaminst > export_to_cluster
comparison export_to_cluster.xml @ 2:b97775e9fe06 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/export_to_cluster/ commit f5c5f3d6ce676937f5c673ec7fc0631a9f490dc2
| author | earlhaminst |
|---|---|
| date | Fri, 24 Mar 2017 12:20:48 -0400 |
| parents | 0dbe46f58158 |
| children | 9838eed606ad |
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| 1:a9d1991c90e3 | 2:b97775e9fe06 |
|---|---|
| 1 <tool id="export_to_cluster" name="Export datasets to cluster" version="0.0.1"> | 1 <tool id="export_to_cluster" name="Export datasets to cluster" version="0.0.1"> |
| 2 <requirements> | 2 <requirements> |
| 3 <requirement type="set_environment">EXPORT_DIR_PREFIX</requirement> | 3 <requirement type="set_environment">EXPORT_DIR_PREFIX</requirement> |
| 4 </requirements> | 4 </requirements> |
| 5 <command> | 5 <command detect_errors="aggressive"> |
| 6 <![CDATA[ | 6 <![CDATA[ |
| 7 python $__tool_directory__/export_to_cluster.py -d '$export_dir' -p "\$EXPORT_DIR_PREFIX" | 7 python '$__tool_directory__/export_to_cluster.py' -d '$export_dir' -p "\$EXPORT_DIR_PREFIX" |
| 8 #for $d in $datasets | 8 #for $d in $datasets |
| 9 '${d}' '${d.hid}: ${d.name}' '${d.ext}' | 9 '${d}' '${d.hid}: ${d.name}' '${d.ext}' |
| 10 #end for | 10 #end for |
| 11 > $log | 11 > '$log' |
| 12 ]]> | 12 ]]> |
| 13 </command> | 13 </command> |
| 14 <inputs> | 14 <inputs> |
| 15 <param name="datasets" type="data" format="data" multiple="true" label="Datasets to export" /> | 15 <param name="datasets" type="data" format="data" multiple="true" label="Datasets to export" /> |
| 16 <param name="export_dir" type="text" value="" label="Directory where to export the datasets" help="Must be writable by the Galaxy user"> | 16 <param name="export_dir" type="text" value="" label="Directory where to export the datasets" help="Must be writable by the Galaxy user"> |