comparison test-data/align4.fasta @ 1:fc8ca4ade638 draft

planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/GAFA/ commit 81a1e79dda127d1afc16c7e456bbec16093a3c3f-dirty
author earlhaminst
date Mon, 20 Feb 2017 06:25:33 -0500
parents
children
comparison
equal deleted inserted replaced
0:af9f72ddf7f9 1:fc8ca4ade638
1 >ENSPTRT00000019089_pantroglodytes_1
2 IGTGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHEL
3 ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK
4 DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN
5 ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATV
6 INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPT
7 KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG
8 CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS
9 VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS
10 YALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ
11 GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL
12 KFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA
13 CGSNSWTVVDIDPPLRSNDPKSQNHP--GWLMRGLKPWTQYAIFVKTLVT
14 FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP
15 NGNITHYLVFWERQAEDSELFELDYCLKWCVWCVCVVVCLWSVCEYEDSA
16 GECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPR
17 PSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKES
18 LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGP
19 VTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFA
20 LERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTDYLDVPSNIAK
21 IIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVF
22 PCSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAV
23 KTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELM
24 AHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFV
25 HRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPE
26 SLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLD
27 QPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHS
28 EENKAPESEELEMEFEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYE
29 EHIPYTHMNGGKKNGRILTLPRSNPS----------
30 >ENST00000341500_homosapiens_1
31 MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHEL
32 ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK
33 DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN
34 ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATV
35 INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPT
36 KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG
37 CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS
38 VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS
39 YALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ
40 GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL
41 KFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA
42 CGSNSWTVVDIDPPLRSNDPKSQNHP--GWLMRGLKPWTQYAIFVKTLVT
43 FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP
44 NGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHN
45 QSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRK
46 RRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVIS
47 GLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHE
48 IFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERG
49 CRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIAKIIIG
50 PLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVFPCSV
51 YVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVN
52 ESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGD
53 LKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDL
54 AARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKD
55 GVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDN
56 CPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENK
57 APESEELEMEFEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYEEHIP
58 YTHMNGGKKNGRILTLPRSNPS--------------
59 >ENST00000302850_homosapiens_1
60 MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHEL
61 ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK
62 DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN
63 ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATV
64 INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPT
65 KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG
66 CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDS
67 VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS
68 YALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ
69 GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL
70 KFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA
71 CGSNSWTVVDIDPPLRSNDPKSQNHP--GWLMRGLKPWTQYAIFVKTLVT
72 FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP
73 NGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHN
74 QSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSS
75 GTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPF
76 EKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEA
77 KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHL
78 CVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYL
79 DVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPE
80 YLSASDVFPCSVYVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKG
81 EAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP
82 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMA
83 YLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLL
84 PVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF
85 VMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSF
86 PEVSFFHSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGGRDGGSS
87 LGFKRSYEEHIPYTHMNGGKKNGRILTLPRSNPS--
88 >ENST00000600492_homosapiens_1
89 YKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGL
90 KPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSN
91 SSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGRVQSSA
92 PL------------------------------------------------
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117 >ENSMUST00000208839_musmusculus_1
118 XTDYYRKGGKGLLPVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQ
119 PYQGLSNEQVLKFVMDGGYLDPPDNCPERLRYEIKTHWPP----------
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146 >ENSMUST00000091291_musmusculus_1
147 MGFGRGCETTAVPLLVAVAALLVGTAGHLYPGEVCPGMDIRNNLTRLHEL
148 ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK
149 DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN
150 ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATV
151 INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHKECLGNCSEPDDPT
152 KCVACRNFYLDGQCVETCPPPYYHFQDWRCVNFSFCQDLHFKCRNSRKPG
153 CHQYVIHNNKCIPECPSGYTMNSSNLMCTPCLGPCPKVCQILEGEKTIDS
154 VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGFLKIRRS
155 YALVSLSFFRKLHLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQ
156 GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL
157 KFSFIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA
158 CGSNSWTVVDIDPPQRSNDPKSQTPSHPGWLMRGLKPWTQYAIFVKTLVT
159 FSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDP
160 NGNITHYLVYWERQAEDSELFELDYCLKGLKLPSRTWSPPFESDDSQKHN
161 QSEYDDSASECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPR----
162 --------PSRKRRSLEEVGNVTATTLTLPDFPNVSSTIVPTSQEEHRPF
163 EKVVNKESLVISGLRHFTGYRIELQACNQDSPDERCSVAAYVSARTMPEA
164 KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHL
165 CVSRKHFALERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTDYL
166 DVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPMGPLYASSNPE
167 YLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNAKDIIKG
168 EAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP
169 TLVVMELMAHGDLKSHLRSLRPDAENNPGRPPPTLQEMIQMTAEIADGMA
170 YLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLL
171 PVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF
172 VMDGGYLDPPDNCPERLTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSF
173 PEVSFFYSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGGREGGSS
174 LSIKRTYDEHIPYTHMNGGKKNGRVLTLPRSNPS--
175 >ENSMUST00000207100_musmusculus_1
176 RSNDPKSQTPSHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDII
177 YVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVYWERQA
178 EDSELFELDYCLKGLKLPSRTWSPPFESDDSQKHNQSEYDDSASECCSCP
179 KTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGNGAEDSRPSRKRRS
180 LEEVGNVTATTLTLPDFPNVSSTI--------------------------
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204 >ENSRNOT00000041155_rattusnorvegicus_1
205 MGSGRGCETTAVPLLMAVAALLVGTAGHLYPGEVCPGMDIRNNLTRLHEL
206 ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLK
207 DLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNN
208 ELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATV
209 INGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHKECLGNCSEPDDPT
210 KCVACRNFYLDGQCVETCPPPYYHFQDWRCVNFSFCQDLHYKCRNSRKPG
211 CHQYVIHNNKCIPECPSGYTMNSSNLMCTPCLGPCPKVCQILEGEKTIDS
212 VTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGFLKIRRS
213 YALVSLSFFRKLHLIRGETLEIGNYSFYALDNQNLRQLWDWNKHNLTITQ
214 GKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELL
215 KFSFIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDA
216 CGSNSWTVVDIDPPQRSNDPKSQTPS--HPGWLMRGLKPWTQYAIFVKTL
217 VTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPS
218 DPNGNITHYLVYWERQAEDSELFELDYCLKGLKLPSRTWSPPFESDDSQK
219 HNQSEYDDSASECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKT
220 SSGNGAEDTRPSRKRRSLEEVGNVTATTPTLPDFPNISSTIAPTSHEEHR
221 PFEKVVNKESLVISGLRHFTGYRIELQACNQDSPEERCSVAAYVSARTMP
222 EAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEEL
223 HLCVSRKHFALERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTD
224 YLDVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPMGPLYASSN
225 PEYLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNAKDII
226 KGEVETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKG
227 QPTLVVMELMAHGDLKSHLRSLRPDAENNPGRPPPTLQEMIQMTAEIADG
228 MAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKG
229 LLPVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQPYQGLSNEQVL
230 KFVMDGGYLDPPDNCPERLTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHP
231 SFPEVSFFYSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGCREGG
232 SSLSIKRTYDEHIPYTHMNGGKKNGRVLTLPRSNPS
233 >ENSRNOT00000067448_rattusnorvegicus_1
234 MGSGRGCETTAVPLLMAVAVAGGTAGHLYPGEVCPGMDIRNNLTRLHELE
235 NCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKD
236 LFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNE
237 LCYLATIDWSRILDSVEDNYIVLNKDDNEECGDVCPGTAKGKTNCPATVI
238 NGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHKECLGNCSEPDDPTK
239 CVACRNFYLDGQCVETCPPPYYHFQDWRCVNFSFCQDLHYKCRNSRKPGC
240 HQYVIHNNKCIPECPSGYTMNSSNLMCTPCLGPCPKVCQILEGEKTIDSV
241 TSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGFLKIRRSY
242 ALVSLSFFRKLHLIRGETLEIGNYSFYALDNQNLRQLWDWNKHNLTITQG
243 KLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLK
244 FSFIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDAC
245 GSNSWTVVDIDPPQRSNDPKSQTPSH--PGWLMRGLKPWTQYAIFVKTLV
246 TFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSD
247 PNGNITHYLVYWERQAEDSELFELDYCLKGLKLPSRTWSPPFESDDSQKH
248 NQSEYDDSASECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTS
249 SGNGAEDTRPSRKRRSLEEVGNVTATTPTLPDFPNISSTIAPTSHEEHRP
250 FEKVVNKESLVISGLRHFTGYRIELQACNQDSPEERCSVAAYVSARTMPE
251 AKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELH
252 LCVSRKHFALERGCRLRGLSPGNYSVRVRATSLAGNGSWTEPTYFYVTDY
253 LDVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPMGPLYASSNP
254 EYLSASDVFPSSVYVPDEWEVPREKITLLRELGQGSFGMVYEGNAKDIIK
255 GEVETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ
256 PTLVVMELMAHGDLKSHLRSLRPDAENNPGRPPPTLQEMIQMTAEIADGM
257 AYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGL
258 LPVRWMSPESLKDGVFTASSDMWSFGVVLWEITSLAEQPYQGLSNEQVLK
259 FVMDGGYLDPPDNCPERLTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPS
260 FPEVSFFYSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGCREGGS
261 SLSIKRTYDEHIPYTHMNGGKKNGRVLTLPRSNPS-
262 >ENSSSCT00000014817_susscrofa_1
263 VCPGMDIRNNLTRLHELANCSVIEGHLQILLMFKTRPEDFRDLSFPKLIM
264 ITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGL
265 YNLMNITRGAVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECG
266 DICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGL
267 CCHSECLGNCSEPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNF
268 SFCQDLHNKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLMCTPCLG
269 PCPKVCHLLEGEKTIDSVTSAQELRGCTIINGSLIINIRGGNNLAAELEA
270 NLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQ
271 NLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERND
272 IALKTNGDQASCENELLKFSYIRTSYDKILLKWEPYWPPDFRDLLGFMLF
273 YKEAPYQNVTEFDGQDACGSNSWTVVDIDPPTRSNDPKSQNHPGWLMRGL
274 KPWTQYAIFVKTLVTFSDERRTYGAK--SDIIYVQTDATSKHV-------
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