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diff test-data/align1.fasta @ 1:fc8ca4ade638 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/GAFA/ commit 81a1e79dda127d1afc16c7e456bbec16093a3c3f-dirty
author earlhaminst
date Mon, 20 Feb 2017 06:25:33 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/align1.fasta	Mon Feb 20 06:25:33 2017 -0500
@@ -0,0 +1,108 @@
+>ENST00000338702_homosapiens_1
+MENQEKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG
+RTYTIRNEHVDYVDVGGAYVGPTQNRILRLSKELGIETYKVNVSERLVQY
+VKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPTDAPWEAQHAD
+KWDKMTMKELIDKICWTKTARRFAYLFVNINVTSEPHEVSALWFLWYVKQ
+CGGTTRIFSVTNGGQERKFVGGSGQVSERIMDLLGDQVKLNHPVTHVDQS
+SDNIIIETLNHEHYECKYVINAIPPTLTAKIHFRPELPAERNQLIQRLPM
+GAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIM
+GFILARKADRLAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEE
+QYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVE
+AGERAAREVLNGLGKVTEKDIWVQEPESKDVPAVEITHTFWERNLPSVSG
+LLKIIGFSTSVTALGFVLYKYKLLPRS
+>ENST00000542639_homosapiens_1
+MGKEIPTDAPWEAQHADKWDKMTMKELIDKICWTKTARRFAYLFVNINVT
+SEPHEVSALWFLWYVKQCGGTTRIFSVTNGGQERKFVGGSGQVSERIMDL
+LGDQVKLNHPVTHVDQSSDNIIIETLNHEHYECKYVINAIPPTLTAKIHF
+RPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKKDYCGCMIIEDEDAPI
+SITLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGS
+QEALHPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFA
+GTETATKWSGYMEGAVEAGERAAREVLNGLGKVTEKDIWVQEPESKDVPA
+VEITHTFWERNLPSVSGLLKIIGFSTSVTALGFVLYKYKLLPRS------
+--------------------------------------------------
+--------------------------------------------------
+---------------------------
+>ENSPTRT00000040520_pantroglodytes_1
+MENQEKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGG
+RTYTIRNEHVDYVDVGGAYVGPTQNRILRLSKELGIETYKVNVSERLVQY
+VKGKTYPFRGAFPPVWNPIAYLDYNNLWRTIDNMGKEIPNDAPWEAQHAD
+EWDKMTMKELIDKICWTKTARRFAYLFVNINVTSEPHEVSALWFLWYVKQ
+CGGTTRIFSVTNGGQERKFVGGSGQVSERIMDLLGDQVKLNHPVTHVDQS
+SDNIIIETLNHEHYECKYVINAIPPTLTAKIHFRPELPAERNQLIQRLPM
+GAIIKCMMYYKEAFWKKKDYCGCMIIEDEDAPISITLDDTKPDGSLPAIM
+GFILARKADRLAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEKNWCEE
+QYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATKWSGYMEGAVE
+AGERAAREVLNGLGKVTEKDIWVQEPESKDVPAVEITHTFWERNLPSVSG
+LLKIIGFSTSVTTLGFVLYKYKLLPRS
+>ENSSSCT00000013404_susscrofa_1
+MERQEKANNAGHMVDVVVIGGGISGLSAAKLLNEYGINVLVLEARDRVGG
+RTYTVRNENVDYVDVGGAYVGPTQNRILRLSKELGLETYKVNVNECLVQY
+VKGKSYPFRGAFPPVWNPIAYLDYNNLWRTMDDMGKKIPADAPWESPHAE
+EWDKMTMKDLIDKICWTKTAKRFASLFVNINVTSEPHEVSALWFLWYVKQ
+CGGTTRIFSVTNGGQERKFVGGSGQVSERIMHLLGDRVKLRCPVTYVDQS
+GDNIIVETLNHELYECQYVISAIPPTLTAKIHFRPELPSERNQLIQRLPM
+GAIIKCMMYYKEAFWKKKNYCGCMIIEDEEAPISITLDDTKPDGSLPAIM
+GFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEEKNWCEE
+QYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGYMEGAVE
+AGERAAREILNALGKVSKKDIWLREPESEDVPAFEITRTFWERNLPSVTG
+LLKIIGFSTSVTALWLAVYKFRLLTRS
+>ENSSSCT00000035258_susscrofa_1
+SLPAIMGFILARKADRLAKVHKEIRKRKICELYAKVLGSQEALHPVHYEE
+KNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGRIFFAGTETATQWSGY
+MEGAVEAGERAAREDVPAFEITRTFWERNLPSVTGLLKIIGFSX------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+---------------------------
+>ENSSSCT00000032764_susscrofa_1
+MDDMGKKIPADAPWESPHAEEWDKMTMKDLIDKICWTKTAKRFASLFVNI
+NVTSEPHEVSALWFLWYVKQCGGTTRIFSVTNGGQERKFVGGSGQVSERI
+MHLLGDRVKLRCPVTYVDQSGDNIIVETLNHELYECQYVISAIPPTL---
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+---------------------------
+>ENSCAFT00000022939_canisfamiliaris_1
+MASREKTSIEGHMFDVVVIGGGISGLSAAKLLAEHEVDVLVLEARDRVGG
+RTYTVRNEHVDYVDVGGAYVGPTQNRILRLSKELGLETYKVNVNERLVQY
+VKGKTYPFRGAFPPVWNPIAYLDYNNLWRTMDNMGKEIPADAPWEAPHAE
+EWDKMTMKDLIDKICWTKTARRFASLFVNINVTSEPHEVSALWFLWYVKQ
+CGGTTRIFSVTNGGQERKFVGGSGQVSERIMERLGDRVKLKRPVTYVDQS
+DDNIIIETLNHELYECKYVISAIPPTLTAKIHFRPELPSERNQLIQRLPM
+GAIIKCMMYYKEAFWKKKDYCGCMIIEDEEAPISITLDDTKPDGSLPAIM
+GFILARKADRLAKLHKEIRKRKICELYAKVLGSQEALQPVHYEEKNWCEE
+QYSGGCYTAYFPPGIMTHYGRVIRQPFGRIYFAGTETATHWSGYMEGAVE
+AGERTAREVLNALGRVAEKDLKTQEPESKDVPAMEITHTFWERNLPSVTG
+LLKLIGFTTSVTALWIVAYKFRLLRRS
+>ENSMUST00000026013_musmusculus_1
+MTDLEKPSITGHMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGG
+RTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQY
+VKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDDMGKEIPVDAPWQARHAE
+EWDKITMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQ
+CGGTSRIFSVTNGGQERKFVGGSGQISEQIMVLLGDKVKLSSPVTYIDQT
+DDNIIIETLNHEHYECKYVISAIPPVLTAKIHFKPELPPERNQLIQRLPM
+GAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPISITLDDTKPDGSMPAIM
+GFILARKAERLAKLHKDIRKRKICELYAKVLGSQEALSPVHYEEKNWCEE
+QYSGGCYTAYFPPGIMTLYGRVIRQPVGRIYFAGTETATQWSGYMEGAVE
+AGERAAREVLNALGKVAKKDIWVQEPESKDVPALEITHTFLERNLPSVPG
+LLKITGFSTSVALLCFVLYKFKQPQS-
+>ENSRNOT00000066674_rattusnorvegicus_1
+MTDLEKPNLAGHMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGG
+RTYTVRNEHVKWVDVGGAYVGPTQNRILRLSKELGIETYKVNVNERLVQY
+VKGKTYPFRGAFPPVWNPLAYLDYNNLWRTMDEMGKEIPVDAPWQARHAQ
+EWDKMTMKDLIDKICWTKTAREFAYLFVNINVTSEPHEVSALWFLWYVRQ
+CGGTARIFSVTNGGQERKFVGGSGQVSEQIMGLLGDKVKLSSPVTYIDQT
+DDNIIVETLNHEHYECKYVISAIPPILTAKIHFKPELPPERNQLIQRLPM
+GAVIKCMVYYKEAFWKKKDYCGCMIIEDEEAPIAITLDDTKPDGSLPAIM
+GFILARKADRLAKLHKDIRKRKICELYAKVLGSQEALYPVHYEEKNWCEE
+QYSGGCYTAYFPPGIMTQYGRVIRQPVGRIYFAGTETATQWSGYMEGAVE
+AGERAAREVLNALGKVAKKDIWVEEPESKDVPAIEITHTFLERNLPSVPG
+LLKITGVSTSVALLCFVLYKIKKLPC-