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diff test-data/align3.fasta @ 1:fc8ca4ade638 draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/GAFA/ commit 81a1e79dda127d1afc16c7e456bbec16093a3c3f-dirty
author earlhaminst
date Mon, 20 Feb 2017 06:25:33 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/align3.fasta	Mon Feb 20 06:25:33 2017 -0500
@@ -0,0 +1,171 @@
+>ENSPTRT00000034846_pantroglodytes_1
+MDPECAQLLPALCAVLVDPRQPVADDTCLEKLLDWFKTVTEGESSVVLLQ
+EHPCLVELLSHVLKVQDLSSGVLSFSLRLAGTFAAQENCFQYLQQGELLP
+GLFGEAGPLGRAAWAVPTVRSGWIQGLRSLAQHPSALRFLADHGAVDTIF
+SLQGDSSLFVASAASQLLVHVLALSMQGGAEGQPCLPGGDWPACAQRIMD
+HVEESLCSAATPKVTQALNVLTTTFGRCQSPWTEALWVRLSPRVACLLER
+DPIPAAHSFVDLLLCVARSPVFSSSDGSLWETVARALSCLGPTHMGPLAL
+GILKLEHCPQALRTQAFQVLLQPLACVLKATVQAPGPPGLLDGTADDATT
+VDTLLASKSSCAGLLCRTLAHLEELQPLPQRPSPWPQASLLGATVTVLRL
+CDGSAAPASSVGGHLCGTLAGCVRVQRAALDFLGTLSQGTGPQELVTQAL
+AVLLECLESPGSSPTVLKKAFQATLRWLLSSPKTPGCSDLGPLIPQFLRE
+LFPVLQKRLCHPCWEVRDSALEFLTQLSRHWGGQADFRCALLASEVPELA
+LQLLQDPESYVRASAVTAMGQLSSQGLHAPTSPEHAEARQSLFPELLHIL
+SVDSEGFPRRAVMQVFTEWLRDGHADAARDTEQFVATVLQVASRDLDWEV
+RAQGLELALVFLGQTLGPPRTHCPYAVALPEVAPAQPLTEALRALCHVGL
+FDFAFCALFDCDRPVAQKSCDLLLFLRDKIASYSSLREARGGPNTASAEA
+TLPRWRAGEQAQPPGDQEPEAVLAMLRSLDLEGLRSTLAESSDHVEKSPQ
+SLLQDMLATGGFLQGD----------------------------------
+---------EADCY---
+>ENST00000340611_homosapiens_1
+MDPECAQLLPALCAVLVDPRQPVADDTCLEKLLDWFKTVTEGESSVVLLQ
+EHPCLVELLSHVLKVQDLSSGVLSFSLRLAGTFAAQENCFQYLQQGELLP
+GLFGEPGPLGRATWAVPTVRSGWIQGLRSLAQHPSALRFLADHGAVDTIF
+SLQGDSSLFVASAASQLLVHVLALSMRGGAEGQPCLPGGDWPACAQKIMD
+HVEESLCSAATPKVTQALNVLTTTFGRCQSPWTEALWVRLSPRVACLLER
+DPIPAAHSFVDLLLCVARSPVFSSSDGSLWETVARALSCLGPTHMGPLAL
+GILKLEHCPQALRTQAFQVLLQPLACVLKATVQAPGPPGLLDGTADDATT
+VDTLLASKSSCAGLLCRTLAHLEELQPLPQRPSPWPQASLLGATVTVLRL
+CDGSAAPASSVGGHLCGTLAGCVRVQRAALDFLGTLSQGTGPQELVTQAL
+AVLLECLESPGSSPTVLKKAFQATLRWLLSSPKTPGCSDLGPLIPQFLRE
+LFPVLQKRLCHPCWEVRDSALEFLTQLSRHWGGQADFRCALLASEVPQLA
+LQLLQDPESYVRASAVTAMGQLSSQGLHAPTSPEHAEARQSLFLELLHIL
+SVDSEGFPRRAVMQVFTEWLRDGHADAAQDTEQFVATVLQAASRDLDWEV
+RAQGLELALVFLGQTLGPPRTHCPYAVALPEVAPAQPLTEALRALCHVGL
+FDFAFCALFDCDRPVAQKSCDLLLFLRDKIASYSSLREARGSPNTASAEA
+TLPRWRAGEQAQPPGDQEPEAVLAMLRSLDLEGLRSTLAESSDHVEKSPQ
+SLLQDMLATGGFLQGD----------------------------------
+---------EADCY---
+>ENSRNOT00000064726_rattusnorvegicus_1
+MDAECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAEPSLQLLQ
+DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFQYLQQGELLL
+GLFGETGALSWAAWSIPSVRSGWIQGLCSLAHHPSALHFLADSGAVDTIF
+SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAVAWPVCAQKIMN
+HVEESLHSKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER
+DPIPATHSLMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPTQAGPLAL
+GTLKLQHCPQELRTQAFRVLLQPLACILKATTQAPGPPGLLDGTAGSLLT
+VDALLSSKSACVGLLCQTLAHLEELQMLPQCPSPWPQVPLLQAAVTILRL
+SDGSADPSSSAGGRLCGALGGCVRVQRAALDFLGTLSLGTSPLELVLEVF
+AVLLKTLESPESSPMVLKKAFQATLRWLQSPHKTPSGSDLSPDALLFLGE
+LFPILQKRLCSPCWEVRDSALEFLTHLIRDWGGQADFREALHSSEVPTLA
+RQLLQDPESYVRASAVGAAGQLSSQGLQATPANQQGLLMDLMHILSTDSE
+GFPRRAVLRVFTEWLRDGHADVVRDTEWFVATVLQAVSRDLDWEVRVQGL
+ELAQVFLIQAMGQPRLHCPYTVGLPGATSSRPHLEFLQTLCRLPLFEFAF
+CALLDCDRPVAQKACDLLLFLRDKTVSCSNPQEAGDSPNSASVEAALQRW
+REGEQAQPLGDLEPEAMLAILRSLDLEGLQGRLAKSSDHVEKSPQSLLQD
+MLATVGVLEENEADCY----------------------------------
+-----------------
+>ENSMUST00000041588_musmusculus_1
+MDPECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQ
+DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLL
+GLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLF
+SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVN
+HVDESLHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER
+DPIPAVHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLAL
+GTLKLQHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLT
+VDILLASKSACVGLLCQTLAHLEELQMLPQCPSPWPQVHLLQAALTILHL
+CDGSADPSSSAGGRLCGTLGGCVRVQRAALDFLGTLSQGTSPLELVLEVF
+AVLLKTLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDLSSDALLFLGE
+LFPILQKRLCSPCWEVRDSALEFLTHLIRHWGGQADFREALRSSEVPTLA
+LQLLQDPESYVRASAVGAAGQLSSQGLQAAPASPENSQAQQGLLMDLMHI
+LSTDSEGFPRRAVLRVFTDWLRDGHADVVRDTEWFVATVLQAVSRDLDWE
+VRVQGLELARVFLTQALGQPSLHCPYTVGLPRASSPRPHPEFLQTLCRLP
+LFEFAFCALLDCDRPVAQKACDLLLFLRDKTVPCSSPREAGDSPNSASVE
+AALQRWREGEQAQPLGDLDPEAMLAILRALDLEGLQGRLAKSSDHVEKSP
+QSLLQDMLATVGVLEENEADCY----------------------------
+-----------------
+>ENSMUST00000153440_musmusculus_1
+MDPECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQ
+DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLL
+GLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLF
+SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVN
+HVDESLHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER
+DPIPAVHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLAL
+GTLKLQHWLAGWDCG-----------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+-----------------
+>ENSMUST00000110806_musmusculus_1
+MDPECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQ
+DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLL
+GLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLF
+SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVN
+HVDESLHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER
+DPIPAVHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLAL
+GTLKLQHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLT
+VDILLASKSACVGLLCQTLAHLEELQMLPQCPSPWPQVHLLQAALTILHL
+CDGSADPSSSAGGRLCGTLGGCVRVQRAALDFLGTLSQGTSPLELVLEVF
+AVLLKTLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDLSSDALLFLGE
+LFPILQKRLCSPCWEVRDSALEFLTHLIRHWGGQADFREALRSSEVPTLA
+LQLLQDPESYVRASAVGAAGQLSSQGLQAAPASPENSQAQQVDTGSW---
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+--------------------------------------------------
+-----------------
+>ENSMUST00000100505_musmusculus_1
+MVHFALSGLIPVAEGCGGGIRTPRLTRSRRERTSYPDLGGTACLIMDPEC
+SRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQDHPCL
+MELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLLGLFGE
+SGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLFSLQGD
+PSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVNHVDES
+LHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFERDPIPA
+VHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLALGTLKL
+QHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLTVDILL
+ASKSACVGLLCQTLAHLEELQMLPQCPSPWPQVHLLQAALTILHLCDGSA
+DPSSSAGGRLCGTLGGCVRVQRAALDFLGTLSQGTSPLELVLEVFAVLLK
+TLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDLSSDALLFLGELFPIL
+QKRLCSPCWEVRDSALEFLTHLIRHWGGQADFREALRSSEVPTLALQLLQ
+DPESYVRASAVGAAGQLSSQGLQAAPASPENSQAQQGLLMDLMHILSTDS
+EGFPRRAVLRVFTDWLRDGHADVVRDTEWFVATVLQAVSRDLDWEVRVQG
+LELARVFLTQALGQPSLHCPYTVGLPRASSPRPHPEFLQTLCRLPLFEFA
+FCALLDCDRPVAQKACDLLLFLRDKTVPCSSPREAGDSPNSASVEAALQR
+WREGEQAQPLGDLDPEAMLAILRALDLEGLQGRLAKSSDHVEKSPQSLLQ
+DMLATVGVLEENEADCY
+>ENSCAFT00000025950_canisfamiliaris_1
+MDPECSQLLPALCAVLADPRQPVADDTCLEKLLDWFKTITKAGSSLLLLQ
+ENPCLVELLCHVLKPQDLSSRVLSFSLRLAGVFAAQEDCFQYLQQGELLP
+RLFGEPGPLGGAAWTAPSVRSGWIQGLRSLAQHPSALHFLADCGAVDTIF
+SLQGDSSLFVASAAGQLLVHILGLSMQGLAEGHPSLQAGDWPVCAQKIVG
+HIEESLHSTAVPQITQALNVLTTTFGHCHDPWTQVLWVRLSPLVGSLLEK
+DPVPAAHSLVDLLLSVARSPGLSSSSCGLWETLAQTLNHLSPTQAGPLAL
+GILKLQDCPQVLRAQAFVILLQPLACVLKATGQDPGPSGVLDSATGDSLT
+VDVLLSSKAACVGLLCRTLAHLELLQPLPQRPCPWPQEPLLGAAVTLLQL
+CRGSASPASDVGRHLCALLLGCVRVQRAALDFLGTLSQGTGPQELVTEVF
+AVLLEYLRSPDSSPTVLKKAFQATFRWLLSSPKTPGCCDLEPHALLVLRE
+LLPVLQKRLCSPCWEVRDSGLEFLTQMTRHWGGQAGFRHALLASEVPKLT
+EQLLRDPESYVRASAVTVMGQLSSQGLHVTPVSPEHPGGQQKSLLVELLH
+ILSTDSEGFPRRAVMQVFTQWLRDHHADVAGDTEQFMARVLQVASQDLDW
+EVRAQGLELALVFLEQTLGQFHSHCPYAVTPPVAAPAGSLAQALQPLCRV
+RLFEFAFRALFDCDRPVAQKSCDLLLFLRAKTASSSGSLEESRSGPDVAS
+VEAALQRWQAGDQGQPLGDLEPEVVLAVLRSVDLEGLRGALAEGSDHMEK
+SPQSLLQDMLATVGVL----------------------------------
+---------GENEADCY
+>ENSSSCT00000008295_susscrofa_1
+MDPECSRLLPALCAVLADPRQPVADDTCLEKLLDWFKTITEAGSSLLVLQ
+ENPCLVELLFDVLKPQDLSPRVLSFSLRLAGMFAAQEDCFQYLQQGELLP
+RLFGEAGPLGGAAWTAPTVRSGWIQGLRSLAQHPRALPFLADCGAVDTIF
+SLQGDSSLFVASAAGQLLVHILDLAMRAPPRGHPGPQACDGPACAQKIVC
+HLEDSLRAAAAPQLTQALNVLTTTFGHCHGLWTPGLWGRLSPLVGHLLEK
+DPVPASHALVDLLLSVARSPVLSSESGPWETLALTLSRLSPMQAGPLALG
+ILKLQDCPQALRTQASGVLLQPLACVLKAAVQGPGRPGRLLGKGGRCRMA
+GPWGPERILGAGAGCHPRCDCCSCCHPGXSALGLAQEARLRLCDNAAIPR
+SDLGGQFCGHLVACVRVQRAALDFLGTLSQRAGPQELVTQVSAVLLEYLS
+GPDSSPTVLKKAFQASLGWLLSSPKTPGCCDLDPHAQQFLRELLPVLQKR
+LCSPCWEVRDSGLEFLTQMARHWGGQAAFRQVLLASEVPRLTRQLLQDPE
+SYVRASAVTATGQLSSWGLHAAPAGPEHPGVQQKSLLSELLHVLATDSEG
+FPRRAVMQVFTEWLRGGHADVAEDPEQFVAGVLQAASRDLDWEVRAQGLE
+LALVFLEQLLGPPGVRCPYAVALPKAAPPGTLAQALQALCRVQLFEFAFR
+ALFDCDRPVAQKSCDLLLFLKAKATSCGTPQEERDSPDVSSVEATLQKWQ
+AGEHGHPLGDLEPAAVVAVLRSMDLEGLQDTLAESSDHVERSPQSLLQDM
+LATVGVLGENEADCY-----------------------------------
+-----------------