Mercurial > repos > earlhaminst > gafa
view test-data/align3.fasta @ 2:0c2f9172334a draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/GAFA/ commit 424b04f764977420ce4d92ebee5929fa18a30efb-dirty
| author | earlhaminst |
|---|---|
| date | Mon, 20 Feb 2017 12:19:21 -0500 |
| parents | fc8ca4ade638 |
| children |
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>ENSPTRT00000034846_pantroglodytes_1 MDPECAQLLPALCAVLVDPRQPVADDTCLEKLLDWFKTVTEGESSVVLLQ EHPCLVELLSHVLKVQDLSSGVLSFSLRLAGTFAAQENCFQYLQQGELLP GLFGEAGPLGRAAWAVPTVRSGWIQGLRSLAQHPSALRFLADHGAVDTIF SLQGDSSLFVASAASQLLVHVLALSMQGGAEGQPCLPGGDWPACAQRIMD HVEESLCSAATPKVTQALNVLTTTFGRCQSPWTEALWVRLSPRVACLLER DPIPAAHSFVDLLLCVARSPVFSSSDGSLWETVARALSCLGPTHMGPLAL GILKLEHCPQALRTQAFQVLLQPLACVLKATVQAPGPPGLLDGTADDATT VDTLLASKSSCAGLLCRTLAHLEELQPLPQRPSPWPQASLLGATVTVLRL CDGSAAPASSVGGHLCGTLAGCVRVQRAALDFLGTLSQGTGPQELVTQAL AVLLECLESPGSSPTVLKKAFQATLRWLLSSPKTPGCSDLGPLIPQFLRE LFPVLQKRLCHPCWEVRDSALEFLTQLSRHWGGQADFRCALLASEVPELA LQLLQDPESYVRASAVTAMGQLSSQGLHAPTSPEHAEARQSLFPELLHIL SVDSEGFPRRAVMQVFTEWLRDGHADAARDTEQFVATVLQVASRDLDWEV RAQGLELALVFLGQTLGPPRTHCPYAVALPEVAPAQPLTEALRALCHVGL FDFAFCALFDCDRPVAQKSCDLLLFLRDKIASYSSLREARGGPNTASAEA TLPRWRAGEQAQPPGDQEPEAVLAMLRSLDLEGLRSTLAESSDHVEKSPQ SLLQDMLATGGFLQGD---------------------------------- ---------EADCY--- >ENST00000340611_homosapiens_1 MDPECAQLLPALCAVLVDPRQPVADDTCLEKLLDWFKTVTEGESSVVLLQ EHPCLVELLSHVLKVQDLSSGVLSFSLRLAGTFAAQENCFQYLQQGELLP GLFGEPGPLGRATWAVPTVRSGWIQGLRSLAQHPSALRFLADHGAVDTIF SLQGDSSLFVASAASQLLVHVLALSMRGGAEGQPCLPGGDWPACAQKIMD HVEESLCSAATPKVTQALNVLTTTFGRCQSPWTEALWVRLSPRVACLLER DPIPAAHSFVDLLLCVARSPVFSSSDGSLWETVARALSCLGPTHMGPLAL GILKLEHCPQALRTQAFQVLLQPLACVLKATVQAPGPPGLLDGTADDATT VDTLLASKSSCAGLLCRTLAHLEELQPLPQRPSPWPQASLLGATVTVLRL CDGSAAPASSVGGHLCGTLAGCVRVQRAALDFLGTLSQGTGPQELVTQAL AVLLECLESPGSSPTVLKKAFQATLRWLLSSPKTPGCSDLGPLIPQFLRE LFPVLQKRLCHPCWEVRDSALEFLTQLSRHWGGQADFRCALLASEVPQLA LQLLQDPESYVRASAVTAMGQLSSQGLHAPTSPEHAEARQSLFLELLHIL SVDSEGFPRRAVMQVFTEWLRDGHADAAQDTEQFVATVLQAASRDLDWEV RAQGLELALVFLGQTLGPPRTHCPYAVALPEVAPAQPLTEALRALCHVGL FDFAFCALFDCDRPVAQKSCDLLLFLRDKIASYSSLREARGSPNTASAEA TLPRWRAGEQAQPPGDQEPEAVLAMLRSLDLEGLRSTLAESSDHVEKSPQ SLLQDMLATGGFLQGD---------------------------------- ---------EADCY--- >ENSRNOT00000064726_rattusnorvegicus_1 MDAECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAEPSLQLLQ DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFQYLQQGELLL GLFGETGALSWAAWSIPSVRSGWIQGLCSLAHHPSALHFLADSGAVDTIF SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAVAWPVCAQKIMN HVEESLHSKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER DPIPATHSLMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPTQAGPLAL GTLKLQHCPQELRTQAFRVLLQPLACILKATTQAPGPPGLLDGTAGSLLT VDALLSSKSACVGLLCQTLAHLEELQMLPQCPSPWPQVPLLQAAVTILRL SDGSADPSSSAGGRLCGALGGCVRVQRAALDFLGTLSLGTSPLELVLEVF AVLLKTLESPESSPMVLKKAFQATLRWLQSPHKTPSGSDLSPDALLFLGE LFPILQKRLCSPCWEVRDSALEFLTHLIRDWGGQADFREALHSSEVPTLA RQLLQDPESYVRASAVGAAGQLSSQGLQATPANQQGLLMDLMHILSTDSE GFPRRAVLRVFTEWLRDGHADVVRDTEWFVATVLQAVSRDLDWEVRVQGL ELAQVFLIQAMGQPRLHCPYTVGLPGATSSRPHLEFLQTLCRLPLFEFAF CALLDCDRPVAQKACDLLLFLRDKTVSCSNPQEAGDSPNSASVEAALQRW REGEQAQPLGDLEPEAMLAILRSLDLEGLQGRLAKSSDHVEKSPQSLLQD MLATVGVLEENEADCY---------------------------------- ----------------- >ENSMUST00000041588_musmusculus_1 MDPECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQ DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLL GLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLF SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVN HVDESLHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER DPIPAVHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLAL GTLKLQHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLT VDILLASKSACVGLLCQTLAHLEELQMLPQCPSPWPQVHLLQAALTILHL CDGSADPSSSAGGRLCGTLGGCVRVQRAALDFLGTLSQGTSPLELVLEVF AVLLKTLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDLSSDALLFLGE LFPILQKRLCSPCWEVRDSALEFLTHLIRHWGGQADFREALRSSEVPTLA LQLLQDPESYVRASAVGAAGQLSSQGLQAAPASPENSQAQQGLLMDLMHI LSTDSEGFPRRAVLRVFTDWLRDGHADVVRDTEWFVATVLQAVSRDLDWE VRVQGLELARVFLTQALGQPSLHCPYTVGLPRASSPRPHPEFLQTLCRLP LFEFAFCALLDCDRPVAQKACDLLLFLRDKTVPCSSPREAGDSPNSASVE AALQRWREGEQAQPLGDLDPEAMLAILRALDLEGLQGRLAKSSDHVEKSP QSLLQDMLATVGVLEENEADCY---------------------------- ----------------- >ENSMUST00000153440_musmusculus_1 MDPECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQ DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLL GLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLF SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVN HVDESLHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER DPIPAVHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLAL GTLKLQHWLAGWDCG----------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ----------------- >ENSMUST00000110806_musmusculus_1 MDPECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQ DHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLL GLFGESGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLF SLQGDPSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVN HVDESLHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFER DPIPAVHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLAL GTLKLQHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLT VDILLASKSACVGLLCQTLAHLEELQMLPQCPSPWPQVHLLQAALTILHL CDGSADPSSSAGGRLCGTLGGCVRVQRAALDFLGTLSQGTSPLELVLEVF AVLLKTLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDLSSDALLFLGE LFPILQKRLCSPCWEVRDSALEFLTHLIRHWGGQADFREALRSSEVPTLA LQLLQDPESYVRASAVGAAGQLSSQGLQAAPASPENSQAQQVDTGSW--- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- -------------------------------------------------- ----------------- >ENSMUST00000100505_musmusculus_1 MVHFALSGLIPVAEGCGGGIRTPRLTRSRRERTSYPDLGGTACLIMDPEC SRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAESSLQLLQDHPCL MELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFEYLQQGELLLGLFGE SGAPGWAAWSIPSVRSGWIQGLCYLAHHPSALHFLADSGAVDTLFSLQGD PSLFVASAASQLLVHILALSMQGGAPGSPVPEAAAWPMCAQKIVNHVDES LHAKATPQVTQALNVLTTTFGRCHNPWTGVLWERLSPPVARLFERDPIPA VHALMDLLLSVARSPVLNFAACGLWEMLAQTLSRLSPIQAGPLALGTLKL QHCPQELRTQAFGVLLQPLACILKATTQAPGPPGLLDGTVGSLLTVDILL ASKSACVGLLCQTLAHLEELQMLPQCPSPWPQVHLLQAALTILHLCDGSA DPSSSAGGRLCGTLGGCVRVQRAALDFLGTLSQGTSPLELVLEVFAVLLK TLESPESSPMVLKKAFQATLRWLQNPHKTPSSSDLSSDALLFLGELFPIL QKRLCSPCWEVRDSALEFLTHLIRHWGGQADFREALRSSEVPTLALQLLQ DPESYVRASAVGAAGQLSSQGLQAAPASPENSQAQQGLLMDLMHILSTDS EGFPRRAVLRVFTDWLRDGHADVVRDTEWFVATVLQAVSRDLDWEVRVQG LELARVFLTQALGQPSLHCPYTVGLPRASSPRPHPEFLQTLCRLPLFEFA FCALLDCDRPVAQKACDLLLFLRDKTVPCSSPREAGDSPNSASVEAALQR WREGEQAQPLGDLDPEAMLAILRALDLEGLQGRLAKSSDHVEKSPQSLLQ DMLATVGVLEENEADCY >ENSCAFT00000025950_canisfamiliaris_1 MDPECSQLLPALCAVLADPRQPVADDTCLEKLLDWFKTITKAGSSLLLLQ ENPCLVELLCHVLKPQDLSSRVLSFSLRLAGVFAAQEDCFQYLQQGELLP RLFGEPGPLGGAAWTAPSVRSGWIQGLRSLAQHPSALHFLADCGAVDTIF SLQGDSSLFVASAAGQLLVHILGLSMQGLAEGHPSLQAGDWPVCAQKIVG HIEESLHSTAVPQITQALNVLTTTFGHCHDPWTQVLWVRLSPLVGSLLEK DPVPAAHSLVDLLLSVARSPGLSSSSCGLWETLAQTLNHLSPTQAGPLAL GILKLQDCPQVLRAQAFVILLQPLACVLKATGQDPGPSGVLDSATGDSLT VDVLLSSKAACVGLLCRTLAHLELLQPLPQRPCPWPQEPLLGAAVTLLQL CRGSASPASDVGRHLCALLLGCVRVQRAALDFLGTLSQGTGPQELVTEVF AVLLEYLRSPDSSPTVLKKAFQATFRWLLSSPKTPGCCDLEPHALLVLRE LLPVLQKRLCSPCWEVRDSGLEFLTQMTRHWGGQAGFRHALLASEVPKLT EQLLRDPESYVRASAVTVMGQLSSQGLHVTPVSPEHPGGQQKSLLVELLH ILSTDSEGFPRRAVMQVFTQWLRDHHADVAGDTEQFMARVLQVASQDLDW EVRAQGLELALVFLEQTLGQFHSHCPYAVTPPVAAPAGSLAQALQPLCRV RLFEFAFRALFDCDRPVAQKSCDLLLFLRAKTASSSGSLEESRSGPDVAS VEAALQRWQAGDQGQPLGDLEPEVVLAVLRSVDLEGLRGALAEGSDHMEK SPQSLLQDMLATVGVL---------------------------------- ---------GENEADCY >ENSSSCT00000008295_susscrofa_1 MDPECSRLLPALCAVLADPRQPVADDTCLEKLLDWFKTITEAGSSLLVLQ ENPCLVELLFDVLKPQDLSPRVLSFSLRLAGMFAAQEDCFQYLQQGELLP RLFGEAGPLGGAAWTAPTVRSGWIQGLRSLAQHPRALPFLADCGAVDTIF SLQGDSSLFVASAAGQLLVHILDLAMRAPPRGHPGPQACDGPACAQKIVC HLEDSLRAAAAPQLTQALNVLTTTFGHCHGLWTPGLWGRLSPLVGHLLEK DPVPASHALVDLLLSVARSPVLSSESGPWETLALTLSRLSPMQAGPLALG ILKLQDCPQALRTQASGVLLQPLACVLKAAVQGPGRPGRLLGKGGRCRMA GPWGPERILGAGAGCHPRCDCCSCCHPGXSALGLAQEARLRLCDNAAIPR SDLGGQFCGHLVACVRVQRAALDFLGTLSQRAGPQELVTQVSAVLLEYLS GPDSSPTVLKKAFQASLGWLLSSPKTPGCCDLDPHAQQFLRELLPVLQKR LCSPCWEVRDSGLEFLTQMARHWGGQAAFRQVLLASEVPRLTRQLLQDPE SYVRASAVTATGQLSSWGLHAAPAGPEHPGVQQKSLLSELLHVLATDSEG FPRRAVMQVFTEWLRGGHADVAEDPEQFVAGVLQAASRDLDWEVRAQGLE LALVFLEQLLGPPGVRCPYAVALPKAAPPGTLAQALQALCRVQLFEFAFR ALFDCDRPVAQKSCDLLLFLKAKATSCGTPQEERDSPDVSSVEATLQKWQ AGEHGHPLGDLEPAAVVAVLRSMDLEGLQDTLAESSDHVERSPQSLLQDM LATVGVLGENEADCY----------------------------------- -----------------