Mercurial > repos > earlhaminst > gff3_to_json
comparison gff3_to_json.xml @ 1:befe6021e476 draft default tip
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gff3_to_json commit 5e5fbe362ed5a4714debda0f2c0834cbbfd34147
| author | earlhaminst |
|---|---|
| date | Tue, 28 Feb 2017 12:06:04 -0500 |
| parents | be6cec883b02 |
| children |
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| 0:be6cec883b02 | 1:befe6021e476 |
|---|---|
| 3 <stdio> | 3 <stdio> |
| 4 <exit_code range="1:" level="fatal" /> | 4 <exit_code range="1:" level="fatal" /> |
| 5 </stdio> | 5 </stdio> |
| 6 <command> | 6 <command> |
| 7 <![CDATA[ | 7 <![CDATA[ |
| 8 python $__tool_directory__/gff3_to_json.py | 8 python '$__tool_directory__/gff3_to_json.py' |
| 9 #for $q in $queries | 9 #for $q in $queries |
| 10 --gff3 "${q.genome}:${q.gff3_input}" | 10 --gff3 '${q.genome}:${q.gff3_input}' |
| 11 #end for | 11 #end for |
| 12 #if str($json) != 'None' | 12 #if str($json) != 'None' |
| 13 #for $v in $json | 13 #for $v in $json |
| 14 --json "$v" | 14 --json '$v' |
| 15 #end for | 15 #end for |
| 16 #end if | 16 #end if |
| 17 $sort | 17 $sort |
| 18 > "$output" | 18 -o '$output' |
| 19 ]]> | 19 ]]> |
| 20 </command> | 20 </command> |
| 21 | 21 |
| 22 <inputs> | 22 <inputs> |
| 23 <repeat name="queries" title="GFF3 dataset"> | 23 <repeat name="queries" title="GFF3 dataset"> |