annotate test-data/MGP_PahariEiJ_G0008413.1.gff3 @ 15:9c62ad7dd113 draft default tip

"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gstf_preparation commit a4e49466bf746633ddc26d052b65ca41576d18fb"

##gff-version 3
##sequence-region 13 1 96704406
13	Ensembl	gene	62596741	62686932	.	+	.	ID=MGP_PahariEiJ_G0008413.1;Name=MGP_PahariEiJ_G0008413.1;biotype=polymorphic_pseudogene
13	Ensembl	transcript	62596741	62626623	.	+	.	ID=MGP_PahariEiJ_T0009933.1;Name=MGP_PahariEiJ_T0009933.1;Parent=MGP_PahariEiJ_G0008413.1;biotype=protein_coding
13	Ensembl	transcript	62596741	62686932	.	+	.	ID=MGP_PahariEiJ_T0009934.1;Name=MGP_PahariEiJ_T0009934.1;Parent=MGP_PahariEiJ_G0008413.1;biotype=polymorphic_pseudogene
13	Ensembl	transcript	62596766	62625799	.	+	.	ID=MGP_PahariEiJ_T0009935.1;Name=MGP_PahariEiJ_T0009935.1;Parent=MGP_PahariEiJ_G0008413.1;biotype=retained_intron
13	Ensembl	transcript	62660839	62686932	.	+	.	ID=MGP_PahariEiJ_T0009936.1;Name=MGP_PahariEiJ_T0009936.1;Parent=MGP_PahariEiJ_G0008413.1;biotype=processed_transcript
13	Ensembl	transcript	62671962	62686919	.	+	.	ID=MGP_PahariEiJ_T0009937.1;Name=MGP_PahariEiJ_T0009937.1;Parent=MGP_PahariEiJ_G0008413.1;biotype=processed_transcript
13	Ensembl	transcript	62671962	62686918	.	+	.	ID=MGP_PahariEiJ_T0009938.1;Name=MGP_PahariEiJ_T0009938.1;Parent=MGP_PahariEiJ_G0008413.1;biotype=protein_coding
13	Ensembl	intron	62596975	62624027	.	+	.	Name=intron00001;Parent=MGP_PahariEiJ_T0009933.1
13	Ensembl	intron	62624355	62626424	.	+	.	Name=intron00002;Parent=MGP_PahariEiJ_T0009933.1
13	Ensembl	intron	62596975	62624027	.	+	.	Name=intron00003;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62624355	62626424	.	+	.	Name=intron00004;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62626620	62637349	.	+	.	Name=intron00005;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62637436	62640660	.	+	.	Name=intron00006;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62640768	62641046	.	+	.	Name=intron00007;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62641179	62641725	.	+	.	Name=intron00008;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62641854	62641961	.	+	.	Name=intron00009;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62642215	62651556	.	+	.	Name=intron00010;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62651793	62657150	.	+	.	Name=intron00011;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62657340	62660197	.	+	.	Name=intron00012;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62660808	62662195	.	+	.	Name=intron00013;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62662303	62663623	.	+	.	Name=intron00014;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62663751	62665451	.	+	.	Name=intron00015;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62665637	62668991	.	+	.	Name=intron00016;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62669299	62671283	.	+	.	Name=intron00017;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62671361	62671958	.	+	.	Name=intron00018;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62672085	62673958	.	+	.	Name=intron00019;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62674160	62678497	.	+	.	Name=intron00020;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62678579	62679702	.	+	.	Name=intron00021;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62679808	62683727	.	+	.	Name=intron00022;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62683916	62685193	.	+	.	Name=intron00023;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	intron	62596975	62624027	.	+	.	Name=intron00024;Parent=MGP_PahariEiJ_T0009935.1
13	Ensembl	intron	62660879	62662195	.	+	.	Name=intron00025;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62662389	62663623	.	+	.	Name=intron00026;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62663751	62665451	.	+	.	Name=intron00027;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62665637	62668991	.	+	.	Name=intron00028;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62669299	62671283	.	+	.	Name=intron00029;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62671361	62671958	.	+	.	Name=intron00030;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62672085	62673958	.	+	.	Name=intron00031;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62674160	62678497	.	+	.	Name=intron00032;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62678579	62679702	.	+	.	Name=intron00033;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62679808	62683727	.	+	.	Name=intron00034;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62683916	62685193	.	+	.	Name=intron00035;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	intron	62672085	62674007	.	+	.	Name=intron00036;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	intron	62674160	62678497	.	+	.	Name=intron00037;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	intron	62678579	62679702	.	+	.	Name=intron00038;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	intron	62679808	62683727	.	+	.	Name=intron00039;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	intron	62683916	62685193	.	+	.	Name=intron00040;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	intron	62672085	62674007	.	+	.	Name=intron00041;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	intron	62674160	62678497	.	+	.	Name=intron00042;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	intron	62678579	62679702	.	+	.	Name=intron00043;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	intron	62679808	62683727	.	+	.	Name=intron00044;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	intron	62683916	62685193	.	+	.	Name=intron00045;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	CDS	62596855	62596942	.	+	0	Name=MGP_PahariEiJ_P0009933;Parent=MGP_PahariEiJ_T0009933.1
13	Ensembl	CDS	62596943	62596974	.	+	2	Name=MGP_PahariEiJ_P0009933;Parent=MGP_PahariEiJ_T0009933.1
13	Ensembl	CDS	62624028	62624354	.	+	0	Name=MGP_PahariEiJ_P0009933;Parent=MGP_PahariEiJ_T0009933.1
13	Ensembl	CDS	62626425	62626620	.	+	0	Name=MGP_PahariEiJ_P0009933;Parent=MGP_PahariEiJ_T0009933.1
13	Ensembl	CDS	62596855	62596942	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62596943	62596974	.	+	2	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62624028	62624354	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62626425	62626619	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62637350	62637435	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62640661	62640767	.	+	1	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62641047	62641178	.	+	2	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62641726	62641853	.	+	2	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62641962	62642214	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62651557	62651792	.	+	2	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62657151	62657339	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62660198	62660807	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62662196	62662302	.	+	2	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62663624	62663750	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62665452	62665636	.	+	2	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62668992	62669298	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62671284	62671360	.	+	2	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62671959	62672084	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62673959	62674159	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62678498	62678578	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62679703	62679807	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62683728	62683915	.	+	0	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62685194	62685509	.	+	1	Name=MGP_PahariEiJ_P0009934;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	CDS	62674016	62674159	.	+	0	Name=MGP_PahariEiJ_P0009938;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	CDS	62678498	62678578	.	+	0	Name=MGP_PahariEiJ_P0009938;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	CDS	62679703	62679807	.	+	0	Name=MGP_PahariEiJ_P0009938;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	CDS	62683728	62683915	.	+	0	Name=MGP_PahariEiJ_P0009938;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	CDS	62685194	62685509	.	+	1	Name=MGP_PahariEiJ_P0009938;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	exon	62596741	62596942	.	+	.	Name=MGP_PahariEiJ_E0009933.1;Parent=MGP_PahariEiJ_T0009933.1
13	Ensembl	exon	62596943	62596974	.	+	.	Name=MGP_PahariEiJ_E0009933.2;Parent=MGP_PahariEiJ_T0009933.1
13	Ensembl	exon	62624028	62624354	.	+	.	Name=MGP_PahariEiJ_E0009933.3;Parent=MGP_PahariEiJ_T0009933.1
13	Ensembl	exon	62626425	62626623	.	+	.	Name=MGP_PahariEiJ_E0009933.4;Parent=MGP_PahariEiJ_T0009933.1
13	Ensembl	exon	62596741	62596942	.	+	.	Name=MGP_PahariEiJ_E0009933.1;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62596943	62596974	.	+	.	Name=MGP_PahariEiJ_E0009933.2;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62624028	62624354	.	+	.	Name=MGP_PahariEiJ_E0009933.3;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62626425	62626619	.	+	.	Name=MGP_PahariEiJ_E0009934.4;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62637350	62637435	.	+	.	Name=MGP_PahariEiJ_E0009934.5;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62640661	62640767	.	+	.	Name=MGP_PahariEiJ_E0009934.6;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62641047	62641178	.	+	.	Name=MGP_PahariEiJ_E0009934.7;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62641726	62641853	.	+	.	Name=MGP_PahariEiJ_E0009934.8;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62641962	62642214	.	+	.	Name=MGP_PahariEiJ_E0009934.9;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62651557	62651792	.	+	.	Name=MGP_PahariEiJ_E0009934.10;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62657151	62657339	.	+	.	Name=MGP_PahariEiJ_E0009934.11;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62660198	62660807	.	+	.	Name=MGP_PahariEiJ_E0009934.12;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62662196	62662302	.	+	.	Name=MGP_PahariEiJ_E0009934.13;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62663624	62663750	.	+	.	Name=MGP_PahariEiJ_E0009934.14;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62665452	62665636	.	+	.	Name=MGP_PahariEiJ_E0009934.15;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62668992	62669298	.	+	.	Name=MGP_PahariEiJ_E0009934.16;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62671284	62671360	.	+	.	Name=MGP_PahariEiJ_E0009934.17;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62671959	62672084	.	+	.	Name=MGP_PahariEiJ_E0009934.18;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62673959	62674159	.	+	.	Name=MGP_PahariEiJ_E0009934.19;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62678498	62678578	.	+	.	Name=MGP_PahariEiJ_E0009934.20;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62679703	62679807	.	+	.	Name=MGP_PahariEiJ_E0009934.21;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62683728	62683915	.	+	.	Name=MGP_PahariEiJ_E0009934.22;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62685194	62686932	.	+	.	Name=MGP_PahariEiJ_E0009934.23;Parent=MGP_PahariEiJ_T0009934.1
13	Ensembl	exon	62596766	62596974	.	+	.	Name=MGP_PahariEiJ_E0009935.1;Parent=MGP_PahariEiJ_T0009935.1
13	Ensembl	exon	62624028	62625799	.	+	.	Name=MGP_PahariEiJ_E0009935.2;Parent=MGP_PahariEiJ_T0009935.1
13	Ensembl	exon	62660839	62660878	.	+	.	Name=MGP_PahariEiJ_E0009936.1;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62662196	62662388	.	+	.	Name=MGP_PahariEiJ_E0009936.2;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62663624	62663750	.	+	.	Name=MGP_PahariEiJ_E0009936.3;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62665452	62665636	.	+	.	Name=MGP_PahariEiJ_E0009936.4;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62668992	62669298	.	+	.	Name=MGP_PahariEiJ_E0009936.5;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62671284	62671360	.	+	.	Name=MGP_PahariEiJ_E0009936.6;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62671959	62672084	.	+	.	Name=MGP_PahariEiJ_E0009936.7;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62673959	62674159	.	+	.	Name=MGP_PahariEiJ_E0009936.8;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62678498	62678578	.	+	.	Name=MGP_PahariEiJ_E0009936.9;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62679703	62679807	.	+	.	Name=MGP_PahariEiJ_E0009936.10;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62683728	62683915	.	+	.	Name=MGP_PahariEiJ_E0009936.11;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62685194	62686932	.	+	.	Name=MGP_PahariEiJ_E0009936.12;Parent=MGP_PahariEiJ_T0009936.1
13	Ensembl	exon	62671962	62672084	.	+	.	Name=MGP_PahariEiJ_E0009937.1;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	exon	62674008	62674159	.	+	.	Name=MGP_PahariEiJ_E0009937.2;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	exon	62678498	62678578	.	+	.	Name=MGP_PahariEiJ_E0009936.9;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	exon	62679703	62679807	.	+	.	Name=MGP_PahariEiJ_E0009936.10;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	exon	62683728	62683915	.	+	.	Name=MGP_PahariEiJ_E0009936.11;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	exon	62685194	62686919	.	+	.	Name=MGP_PahariEiJ_E0009937.6;Parent=MGP_PahariEiJ_T0009937.1
13	Ensembl	exon	62671962	62672084	.	+	.	Name=MGP_PahariEiJ_E0009937.1;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	exon	62674008	62674159	.	+	.	Name=MGP_PahariEiJ_E0009938.2;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	exon	62678498	62678578	.	+	.	Name=MGP_PahariEiJ_E0009934.20;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	exon	62679703	62679807	.	+	.	Name=MGP_PahariEiJ_E0009934.21;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	exon	62683728	62683915	.	+	.	Name=MGP_PahariEiJ_E0009934.22;Parent=MGP_PahariEiJ_T0009938.1
13	Ensembl	exon	62685194	62686918	.	+	.	Name=MGP_PahariEiJ_E0009938.6;Parent=MGP_PahariEiJ_T0009938.1