Mercurial > repos > earlhaminst > gstf_preparation
diff test-data/Caenorhabditis_elegans.WBcel235.87.chromosome.I.shortened.gff3 @ 0:28879ca33b5f draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gstf_preparation commit 651fae48371f845578753052c6fe173e3bb35670
| author | earlhaminst |
|---|---|
| date | Wed, 15 Mar 2017 20:18:57 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Caenorhabditis_elegans.WBcel235.87.chromosome.I.shortened.gff3 Wed Mar 15 20:18:57 2017 -0400 @@ -0,0 +1,199 @@ +##gff-version 3 +##sequence-region I 1 15072434 +#!genome-build WormBase WBcel235 +#!genome-version WBcel235 +#!genome-date 2012-12 +#!genome-build-accession NCBI:GCA_000002985.3 +#!genebuild-last-updated 2015-10 +I WormBase chromosome 1 15072434 . . . ID=chromosome:I;Alias=BX284601.5,NC_003279.8 +### +I WormBase snoRNA_gene 3747 3909 . - . ID=gene:WBGene00023193;Name=Y74C9A.6;biotype=snoRNA;gene_id=WBGene00023193;logic_name=wormbase_non_coding +I WormBase snoRNA 3747 3909 . - . ID=transcript:Y74C9A.6;Parent=gene:WBGene00023193;Name=Y74C9A.6;biotype=snoRNA;transcript_id=Y74C9A.6 +I WormBase exon 3747 3909 . - . Parent=transcript:Y74C9A.6;Name=Y74C9A.6.e1;constitutive=1;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.6.e1;rank=1 +### +I WormBase gene 4119 10230 . - . ID=gene:WBGene00022277;Name=homt-1;biotype=protein_coding;description=Alpha N-terminal protein methyltransferase 1 [Source:UniProtKB/Swiss-Prot%3BAcc:Q9N4D9];gene_id=WBGene00022277;logic_name=wormbase +I WormBase mRNA 4119 10230 . - . ID=transcript:Y74C9A.3;Parent=gene:WBGene00022277;Name=Y74C9A.3;biotype=protein_coding;transcript_id=Y74C9A.3 +I WormBase three_prime_UTR 4119 4220 . - . Parent=transcript:Y74C9A.3 +I WormBase exon 4119 4358 . - . Parent=transcript:Y74C9A.3;Name=Y74C9A.3.e5;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Y74C9A.3.e5;rank=5 +I WormBase CDS 4221 4358 . - 0 ID=CDS:Y74C9A.3;Parent=transcript:Y74C9A.3;protein_id=Y74C9A.3 +I WormBase exon 5195 5296 . - . Parent=transcript:Y74C9A.3;Name=Y74C9A.3.e4;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Y74C9A.3.e4;rank=4 +I WormBase CDS 5195 5296 . - 0 ID=CDS:Y74C9A.3;Parent=transcript:Y74C9A.3;protein_id=Y74C9A.3 +I WormBase exon 6037 6327 . - . Parent=transcript:Y74C9A.3;Name=Y74C9A.3.e3;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Y74C9A.3.e3;rank=3 +I WormBase CDS 6037 6327 . - 0 ID=CDS:Y74C9A.3;Parent=transcript:Y74C9A.3;protein_id=Y74C9A.3 +I WormBase exon 9727 9846 . - . Parent=transcript:Y74C9A.3;Name=Y74C9A.3.e2;constitutive=1;ensembl_end_phase=0;ensembl_phase=0;exon_id=Y74C9A.3.e2;rank=2 +I WormBase CDS 9727 9846 . - 0 ID=CDS:Y74C9A.3;Parent=transcript:Y74C9A.3;protein_id=Y74C9A.3 +I WormBase CDS 10095 10148 . - 0 ID=CDS:Y74C9A.3;Parent=transcript:Y74C9A.3;protein_id=Y74C9A.3 +I WormBase exon 10095 10230 . - . Parent=transcript:Y74C9A.3;Name=Y74C9A.3.e1;constitutive=1;ensembl_end_phase=0;ensembl_phase=-1;exon_id=Y74C9A.3.e1;rank=1 +I WormBase five_prime_UTR 10149 10230 . - . Parent=transcript:Y74C9A.3 +### +I WormBase gene 10413 16842 . + . ID=gene:WBGene00022276;Name=nlp-40;biotype=protein_coding;description=Neuropeptide-Like Protein [Source:RefSeq peptide%3BAcc:NP_001293206];gene_id=WBGene00022276;logic_name=wormbase +I WormBase mRNA 10413 16842 . + . ID=transcript:Y74C9A.2a.2;Parent=gene:WBGene00022276;Name=Y74C9A.2a.2;biotype=protein_coding;transcript_id=Y74C9A.2a.2 +I WormBase exon 10413 10585 . + . Parent=transcript:Y74C9A.2a.2;Name=Y74C9A.2a.2.e1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2a.2.e1;rank=1 +I WormBase five_prime_UTR 10413 10585 . + . Parent=transcript:Y74C9A.2a.2 +I WormBase five_prime_UTR 11618 11640 . + . Parent=transcript:Y74C9A.2a.2 +I WormBase exon 11618 11689 . + . Parent=transcript:Y74C9A.2a.2;Name=Y74C9A.2a.1.e1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.2a.1.e1;rank=2 +I WormBase CDS 11641 11689 . + 0 ID=CDS:Y74C9A.2a.2;Parent=transcript:Y74C9A.2a.2;protein_id=Y74C9A.2a.2 +I WormBase exon 14951 15160 . + . Parent=transcript:Y74C9A.2a.2;Name=Y74C9A.2a.1.e2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e2;rank=3 +I WormBase CDS 14951 15160 . + 2 ID=CDS:Y74C9A.2a.2;Parent=transcript:Y74C9A.2a.2;protein_id=Y74C9A.2a.2 +I WormBase CDS 16473 16585 . + 2 ID=CDS:Y74C9A.2a.2;Parent=transcript:Y74C9A.2a.2;protein_id=Y74C9A.2a.2 +I WormBase exon 16473 16842 . + . Parent=transcript:Y74C9A.2a.2;Name=Y74C9A.2a.1.e3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e3;rank=4 +I WormBase three_prime_UTR 16586 16842 . + . Parent=transcript:Y74C9A.2a.2 +I WormBase mRNA 11495 16793 . + . ID=transcript:Y74C9A.2b.2;Parent=gene:WBGene00022276;Name=Y74C9A.2b.2;biotype=protein_coding;transcript_id=Y74C9A.2b.2 +I WormBase exon 11495 11561 . + . Parent=transcript:Y74C9A.2b.2;Name=Y74C9A.2b.2.e1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2b.2.e1;rank=1 +I WormBase five_prime_UTR 11495 11561 . + . Parent=transcript:Y74C9A.2b.2 +I WormBase exon 11618 11689 . + . Parent=transcript:Y74C9A.2b.2;Name=Y74C9A.2b.1.e2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2b.1.e2;rank=2 +I WormBase five_prime_UTR 11618 11689 . + . Parent=transcript:Y74C9A.2b.2 +I WormBase five_prime_UTR 14951 15102 . + . Parent=transcript:Y74C9A.2b.2 +I WormBase exon 14951 15160 . + . Parent=transcript:Y74C9A.2b.2;Name=Y74C9A.2b.1.e3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.2b.1.e3;rank=3 +I WormBase CDS 15103 15160 . + 0 ID=CDS:Y74C9A.2b.2;Parent=transcript:Y74C9A.2b.2;protein_id=Y74C9A.2b.2 +I WormBase exon 16473 16585 . + . Parent=transcript:Y74C9A.2b.2;Name=Y74C9A.2b.2.e4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.2b.2.e4;rank=4 +I WormBase CDS 16473 16585 . + 2 ID=CDS:Y74C9A.2b.2;Parent=transcript:Y74C9A.2b.2;protein_id=Y74C9A.2b.2 +I WormBase exon 16702 16793 . + . Parent=transcript:Y74C9A.2b.2;Name=Y74C9A.2b.2.e5;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2b.2.e5;rank=5 +I WormBase three_prime_UTR 16702 16793 . + . Parent=transcript:Y74C9A.2b.2 +I WormBase mRNA 11499 16842 . + . ID=transcript:Y74C9A.2b.1;Parent=gene:WBGene00022276;Name=Y74C9A.2b.1;biotype=protein_coding;transcript_id=Y74C9A.2b.1 +I WormBase exon 11499 11561 . + . Parent=transcript:Y74C9A.2b.1;Name=Y74C9A.2b.1.e1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2b.1.e1;rank=1 +I WormBase five_prime_UTR 11499 11561 . + . Parent=transcript:Y74C9A.2b.1 +I WormBase exon 11618 11689 . + . Parent=transcript:Y74C9A.2b.1;Name=Y74C9A.2b.1.e2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2b.1.e2;rank=2 +I WormBase five_prime_UTR 11618 11689 . + . Parent=transcript:Y74C9A.2b.1 +I WormBase five_prime_UTR 14951 15102 . + . Parent=transcript:Y74C9A.2b.1 +I WormBase exon 14951 15160 . + . Parent=transcript:Y74C9A.2b.1;Name=Y74C9A.2b.1.e3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.2b.1.e3;rank=3 +I WormBase CDS 15103 15160 . + 0 ID=CDS:Y74C9A.2b.1;Parent=transcript:Y74C9A.2b.1;protein_id=Y74C9A.2b.1 +I WormBase CDS 16473 16585 . + 2 ID=CDS:Y74C9A.2b.1;Parent=transcript:Y74C9A.2b.1;protein_id=Y74C9A.2b.1 +I WormBase exon 16473 16842 . + . Parent=transcript:Y74C9A.2b.1;Name=Y74C9A.2a.1.e3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e3;rank=4 +I WormBase three_prime_UTR 16586 16842 . + . Parent=transcript:Y74C9A.2b.1 +I WormBase mRNA 11499 16842 . + . ID=transcript:Y74C9A.2b.4;Parent=gene:WBGene00022276;Name=Y74C9A.2b.4;biotype=protein_coding;transcript_id=Y74C9A.2b.4 +I WormBase exon 11499 11557 . + . Parent=transcript:Y74C9A.2b.4;Name=Y74C9A.2b.4.e1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2b.4.e1;rank=1 +I WormBase five_prime_UTR 11499 11557 . + . Parent=transcript:Y74C9A.2b.4 +I WormBase exon 11618 11689 . + . Parent=transcript:Y74C9A.2b.4;Name=Y74C9A.2b.1.e2;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2b.1.e2;rank=2 +I WormBase five_prime_UTR 11618 11689 . + . Parent=transcript:Y74C9A.2b.4 +I WormBase five_prime_UTR 14951 15102 . + . Parent=transcript:Y74C9A.2b.4 +I WormBase exon 14951 15160 . + . Parent=transcript:Y74C9A.2b.4;Name=Y74C9A.2b.1.e3;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.2b.1.e3;rank=3 +I WormBase CDS 15103 15160 . + 0 ID=CDS:Y74C9A.2b.4;Parent=transcript:Y74C9A.2b.4;protein_id=Y74C9A.2b.4 +I WormBase CDS 16473 16585 . + 2 ID=CDS:Y74C9A.2b.4;Parent=transcript:Y74C9A.2b.4;protein_id=Y74C9A.2b.4 +I WormBase exon 16473 16842 . + . Parent=transcript:Y74C9A.2b.4;Name=Y74C9A.2a.1.e3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e3;rank=4 +I WormBase three_prime_UTR 16586 16842 . + . Parent=transcript:Y74C9A.2b.4 +I WormBase mRNA 11505 16842 . + . ID=transcript:Y74C9A.2a.3;Parent=gene:WBGene00022276;Name=Y74C9A.2a.3;biotype=protein_coding;transcript_id=Y74C9A.2a.3 +I WormBase exon 11505 11561 . + . Parent=transcript:Y74C9A.2a.3;Name=Y74C9A.2a.3.e1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2a.3.e1;rank=1 +I WormBase five_prime_UTR 11505 11561 . + . Parent=transcript:Y74C9A.2a.3 +I WormBase five_prime_UTR 11623 11640 . + . Parent=transcript:Y74C9A.2a.3 +I WormBase exon 11623 11689 . + . Parent=transcript:Y74C9A.2a.3;Name=Y74C9A.2a.3.e2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.2a.3.e2;rank=2 +I WormBase CDS 11641 11689 . + 0 ID=CDS:Y74C9A.2a.3;Parent=transcript:Y74C9A.2a.3;protein_id=Y74C9A.2a.3 +I WormBase exon 14951 15160 . + . Parent=transcript:Y74C9A.2a.3;Name=Y74C9A.2a.1.e2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e2;rank=3 +I WormBase CDS 14951 15160 . + 2 ID=CDS:Y74C9A.2a.3;Parent=transcript:Y74C9A.2a.3;protein_id=Y74C9A.2a.3 +I WormBase CDS 16473 16585 . + 2 ID=CDS:Y74C9A.2a.3;Parent=transcript:Y74C9A.2a.3;protein_id=Y74C9A.2a.3 +I WormBase exon 16473 16842 . + . Parent=transcript:Y74C9A.2a.3;Name=Y74C9A.2a.1.e3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e3;rank=4 +I WormBase three_prime_UTR 16586 16842 . + . Parent=transcript:Y74C9A.2a.3 +I WormBase mRNA 11618 16842 . + . ID=transcript:Y74C9A.2a.1;Parent=gene:WBGene00022276;Name=Y74C9A.2a.1;biotype=protein_coding;transcript_id=Y74C9A.2a.1 +I WormBase five_prime_UTR 11618 11640 . + . Parent=transcript:Y74C9A.2a.1 +I WormBase exon 11618 11689 . + . Parent=transcript:Y74C9A.2a.1;Name=Y74C9A.2a.1.e1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.2a.1.e1;rank=1 +I WormBase CDS 11641 11689 . + 0 ID=CDS:Y74C9A.2a.1;Parent=transcript:Y74C9A.2a.1;protein_id=Y74C9A.2a.1 +I WormBase exon 14951 15160 . + . Parent=transcript:Y74C9A.2a.1;Name=Y74C9A.2a.1.e2;constitutive=0;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e2;rank=2 +I WormBase CDS 14951 15160 . + 2 ID=CDS:Y74C9A.2a.1;Parent=transcript:Y74C9A.2a.1;protein_id=Y74C9A.2a.1 +I WormBase CDS 16473 16585 . + 2 ID=CDS:Y74C9A.2a.1;Parent=transcript:Y74C9A.2a.1;protein_id=Y74C9A.2a.1 +I WormBase exon 16473 16842 . + . Parent=transcript:Y74C9A.2a.1;Name=Y74C9A.2a.1.e3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e3;rank=3 +I WormBase three_prime_UTR 16586 16842 . + . Parent=transcript:Y74C9A.2a.1 +I WormBase mRNA 11623 16842 . + . ID=transcript:Y74C9A.2b.3;Parent=gene:WBGene00022276;Name=Y74C9A.2b.3;biotype=protein_coding;transcript_id=Y74C9A.2b.3 +I WormBase exon 11623 11686 . + . Parent=transcript:Y74C9A.2b.3;Name=Y74C9A.2b.3.e1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.2b.3.e1;rank=1 +I WormBase five_prime_UTR 11623 11686 . + . Parent=transcript:Y74C9A.2b.3 +I WormBase five_prime_UTR 14950 15102 . + . Parent=transcript:Y74C9A.2b.3 +I WormBase exon 14950 15160 . + . Parent=transcript:Y74C9A.2b.3;Name=Y74C9A.2b.3.e2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.2b.3.e2;rank=2 +I WormBase CDS 15103 15160 . + 0 ID=CDS:Y74C9A.2b.3;Parent=transcript:Y74C9A.2b.3;protein_id=Y74C9A.2b.3 +I WormBase CDS 16473 16585 . + 2 ID=CDS:Y74C9A.2b.3;Parent=transcript:Y74C9A.2b.3;protein_id=Y74C9A.2b.3 +I WormBase exon 16473 16842 . + . Parent=transcript:Y74C9A.2b.3;Name=Y74C9A.2a.1.e3;constitutive=0;ensembl_end_phase=-1;ensembl_phase=1;exon_id=Y74C9A.2a.1.e3;rank=3 +I WormBase three_prime_UTR 16586 16842 . + . Parent=transcript:Y74C9A.2b.3 +### +I WormBase gene 17483 26781 . - . ID=gene:WBGene00022278;Name=rcor-1;biotype=protein_coding;description=RCOR (REST CO-Repressor) homolog [Source:RefSeq peptide%3BAcc:NP_001293207];gene_id=WBGene00022278;logic_name=wormbase +I WormBase mRNA 17483 24796 . - . ID=transcript:Y74C9A.4d;Parent=gene:WBGene00022278;Name=Y74C9A.4d;biotype=protein_coding;transcript_id=Y74C9A.4d +I WormBase three_prime_UTR 17483 17910 . - . Parent=transcript:Y74C9A.4d +I WormBase exon 17483 17958 . - . Parent=transcript:Y74C9A.4d;Name=Y74C9A.4a.e12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Y74C9A.4a.e12;rank=7 +I WormBase CDS 17911 17958 . - 0 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d +I WormBase exon 18006 18115 . - . Parent=transcript:Y74C9A.4d;Name=Y74C9A.4a.e11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4a.e11;rank=6 +I WormBase CDS 18006 18115 . - 2 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d +I WormBase exon 19015 19241 . - . Parent=transcript:Y74C9A.4d;Name=Y74C9A.4a.e10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Y74C9A.4a.e10;rank=5 +I WormBase CDS 19015 19241 . - 1 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d +I WormBase exon 20271 20478 . - . Parent=transcript:Y74C9A.4d;Name=Y74C9A.4a.e9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Y74C9A.4a.e9;rank=4 +I WormBase CDS 20271 20478 . - 2 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d +I WormBase exon 20848 20964 . - . Parent=transcript:Y74C9A.4d;Name=Y74C9A.4a.e8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.4a.e8;rank=3 +I WormBase CDS 20848 20964 . - 2 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d +I WormBase CDS 21013 21127 . - 0 ID=CDS:Y74C9A.4d;Parent=transcript:Y74C9A.4d;protein_id=Y74C9A.4d +I WormBase exon 21013 21136 . - . Parent=transcript:Y74C9A.4d;Name=Y74C9A.4d.e2;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.4d.e2;rank=2 +I WormBase five_prime_UTR 21128 21136 . - . Parent=transcript:Y74C9A.4d +I WormBase exon 24651 24796 . - . Parent=transcript:Y74C9A.4d;Name=Y74C9A.4d.e1;constitutive=0;ensembl_end_phase=-1;ensembl_phase=-1;exon_id=Y74C9A.4d.e1;rank=1 +I WormBase five_prime_UTR 24651 24796 . - . Parent=transcript:Y74C9A.4d +I WormBase mRNA 17483 26643 . - . ID=transcript:Y74C9A.4c;Parent=gene:WBGene00022278;Name=Y74C9A.4c;biotype=protein_coding;transcript_id=Y74C9A.4c +I WormBase three_prime_UTR 17483 17910 . - . Parent=transcript:Y74C9A.4c +I WormBase exon 17483 17958 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4a.e12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Y74C9A.4a.e12;rank=11 +I WormBase CDS 17911 17958 . - 0 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase exon 18006 18115 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4a.e11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4a.e11;rank=10 +I WormBase CDS 18006 18115 . - 2 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase exon 19015 19241 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4a.e10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Y74C9A.4a.e10;rank=9 +I WormBase CDS 19015 19241 . - 1 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase exon 20271 20478 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4a.e9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Y74C9A.4a.e9;rank=8 +I WormBase CDS 20271 20478 . - 2 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase exon 20848 20964 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4a.e8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.4a.e8;rank=7 +I WormBase CDS 20848 20964 . - 2 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase exon 21013 21139 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4a.e7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Y74C9A.4a.e7;rank=6 +I WormBase CDS 21013 21139 . - 0 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase exon 24651 24845 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4a.e6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Y74C9A.4a.e6;rank=5 +I WormBase CDS 24651 24845 . - 0 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase exon 24929 25090 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4a.e5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Y74C9A.4a.e5;rank=4 +I WormBase CDS 24929 25090 . - 0 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase exon 25273 25472 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4a.e4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4a.e4;rank=3 +I WormBase CDS 25273 25472 . - 2 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase exon 26371 26524 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4a.e3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Y74C9A.4a.e3;rank=2 +I WormBase CDS 26371 26524 . - 0 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase exon 26590 26643 . - . Parent=transcript:Y74C9A.4c;Name=Y74C9A.4c.e1;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Y74C9A.4c.e1;rank=1 +I WormBase CDS 26590 26643 . - 0 ID=CDS:Y74C9A.4c;Parent=transcript:Y74C9A.4c;protein_id=Y74C9A.4c +I WormBase mRNA 17483 26778 . - . ID=transcript:Y74C9A.4b;Parent=gene:WBGene00022278;Name=Y74C9A.4b;biotype=protein_coding;transcript_id=Y74C9A.4b +I WormBase three_prime_UTR 17483 17910 . - . Parent=transcript:Y74C9A.4b +I WormBase exon 17483 17958 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4a.e12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Y74C9A.4a.e12;rank=12 +I WormBase CDS 17911 17958 . - 0 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 18006 18115 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4a.e11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4a.e11;rank=11 +I WormBase CDS 18006 18115 . - 2 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 19015 19241 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4a.e10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Y74C9A.4a.e10;rank=10 +I WormBase CDS 19015 19241 . - 1 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 20271 20478 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4a.e9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Y74C9A.4a.e9;rank=9 +I WormBase CDS 20271 20478 . - 2 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 20848 20964 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4a.e8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.4a.e8;rank=8 +I WormBase CDS 20848 20964 . - 2 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 21013 21139 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4a.e7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Y74C9A.4a.e7;rank=7 +I WormBase CDS 21013 21139 . - 0 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 24651 24845 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4a.e6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Y74C9A.4a.e6;rank=6 +I WormBase CDS 24651 24845 . - 0 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 24929 25090 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4a.e5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Y74C9A.4a.e5;rank=5 +I WormBase CDS 24929 25090 . - 0 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 25273 25472 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4a.e4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4a.e4;rank=4 +I WormBase CDS 25273 25472 . - 2 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 26371 26524 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4a.e3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Y74C9A.4a.e3;rank=3 +I WormBase CDS 26371 26524 . - 0 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 26590 26690 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4b.e2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4b.e2;rank=2 +I WormBase CDS 26590 26690 . - 2 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase exon 26733 26778 . - . Parent=transcript:Y74C9A.4b;Name=Y74C9A.4b.e1;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Y74C9A.4b.e1;rank=1 +I WormBase CDS 26733 26778 . - 0 ID=CDS:Y74C9A.4b;Parent=transcript:Y74C9A.4b;protein_id=Y74C9A.4b +I WormBase mRNA 17483 26781 . - . ID=transcript:Y74C9A.4a;Parent=gene:WBGene00022278;Name=Y74C9A.4a;biotype=protein_coding;transcript_id=Y74C9A.4a +I WormBase three_prime_UTR 17483 17910 . - . Parent=transcript:Y74C9A.4a +I WormBase exon 17483 17958 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e12;constitutive=1;ensembl_end_phase=-1;ensembl_phase=0;exon_id=Y74C9A.4a.e12;rank=12 +I WormBase CDS 17911 17958 . - 0 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 18006 18115 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e11;constitutive=1;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4a.e11;rank=11 +I WormBase CDS 18006 18115 . - 2 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 19015 19241 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e10;constitutive=1;ensembl_end_phase=1;ensembl_phase=2;exon_id=Y74C9A.4a.e10;rank=10 +I WormBase CDS 19015 19241 . - 1 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 20271 20478 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e9;constitutive=1;ensembl_end_phase=2;ensembl_phase=1;exon_id=Y74C9A.4a.e9;rank=9 +I WormBase CDS 20271 20478 . - 2 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 20848 20964 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e8;constitutive=1;ensembl_end_phase=1;ensembl_phase=1;exon_id=Y74C9A.4a.e8;rank=8 +I WormBase CDS 20848 20964 . - 2 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 21013 21139 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e7;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Y74C9A.4a.e7;rank=7 +I WormBase CDS 21013 21139 . - 0 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 24651 24845 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e6;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Y74C9A.4a.e6;rank=6 +I WormBase CDS 24651 24845 . - 0 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 24929 25090 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e5;constitutive=0;ensembl_end_phase=0;ensembl_phase=0;exon_id=Y74C9A.4a.e5;rank=5 +I WormBase CDS 24929 25090 . - 0 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 25273 25472 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e4;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4a.e4;rank=4 +I WormBase CDS 25273 25472 . - 2 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 26371 26524 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e3;constitutive=0;ensembl_end_phase=1;ensembl_phase=0;exon_id=Y74C9A.4a.e3;rank=3 +I WormBase CDS 26371 26524 . - 0 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 26590 26681 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e2;constitutive=0;ensembl_end_phase=0;ensembl_phase=1;exon_id=Y74C9A.4a.e2;rank=2 +I WormBase CDS 26590 26681 . - 2 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase CDS 26733 26778 . - 0 ID=CDS:Y74C9A.4a;Parent=transcript:Y74C9A.4a;protein_id=Y74C9A.4a +I WormBase exon 26733 26781 . - . Parent=transcript:Y74C9A.4a;Name=Y74C9A.4a.e1;constitutive=0;ensembl_end_phase=1;ensembl_phase=-1;exon_id=Y74C9A.4a.e1;rank=1 +I WormBase five_prime_UTR 26779 26781 . - . Parent=transcript:Y74C9A.4a