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view test-data/Caenorhabditis_elegans.WBcel235.cds.all.shortened.fa @ 6:56bbdbfe3eaa draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/gstf_preparation commit fa875eea77a9471acada2b7b8882a0467994c960
author earlhaminst
date Wed, 25 Apr 2018 11:00:33 -0400
parents 28879ca33b5f
children
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>Y74C9A.3 cds chromosome:WBcel235:I:4119:10230:-1 gene:WBGene00022277 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:homt-1 description:Alpha N-terminal protein methyltransferase 1  [Source:UniProtKB/Swiss-Prot;Acc:Q9N4D9]
ATGAGCTCTTCATCATCTTCTAGAATTCACAATGGTGAAGATGTTTATGAAAAGGCGGAG
GAATACTGGAGCCGCGCGAGCCAGGACGTCAACGGAATGCTCGGCGGATTCGAAGCGCTT
CACGCGCCCGACATATCGGCGTCGAAACGATTTATTGAAGGACTGAAGAAAAAGAATCTA
TTCGGCTACTTTGACTATGCACTGGACTGCGGAGCGGGTATCGGACGTGTTACAAAGCAT
CTCTTAATGCCATTCTTCTCGAAAGTTGATATGGAAGACGTCGTCGAGGAGTTGATCACG
AAAAGTGATCAATATATTGGAAAACATCCACGAATTGGAGATAAATTCGTCGAAGGACTG
CAGACGTTTGCACCGCCCGAACGACGTTATGATTTGATATGGATTCAATGGGTTTCAGGG
CATTTGGTTGATGAGGATTTGGTTGATTTCTTTAAAAGATGTGCGAAAGGACTGAAACCT
GGTGGATGTATTGTGCTCAAGGATAATGTGACAAATCACGAGAAACGGTTATTCGACGAT
GATGATCATAGTTGGACGAGAACAGAGCCCGAGCTTCTTAAAGCGTTCGCCGATTCTCAA
CTGGACATGGTCTCGAAAGCACTGCAAACCGGATTCCCAAAGGAGATTTATCCAGTAAAA
ATGTATGCATTGAAGCCTCAACACACCGGATTCACCAATAATTGA
>Y74C9A.2a.1 cds chromosome:WBcel235:I:11618:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
ATGAAACTCGTAATTCTGCTATCTTTTGTTGCGACAGTTGCGGTTTTTGCGGCTCCATCG
GCTCCGGCAGGTCTCGAGGAGAAGCTGCGTGCTCTTCAGGAGCAACTGTACAGTCTGGAG
AAAGAGAACGGAGTTGATGTGAAGCAAAAGGAGCAACCAGCAGCAGCCGACACATTCCTT
GGATTTGTTCCACAGAAGAGAATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAAT
GAGGATTCTAGAGCTCCATTGCTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGA
GCCGGAGAACGCCTCGGAGTCAACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAAT
CAATTCCAATAA
>Y74C9A.2a.2 cds chromosome:WBcel235:I:10413:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
ATGAAACTCGTAATTCTGCTATCTTTTGTTGCGACAGTTGCGGTTTTTGCGGCTCCATCG
GCTCCGGCAGGTCTCGAGGAGAAGCTGCGTGCTCTTCAGGAGCAACTGTACAGTCTGGAG
AAAGAGAACGGAGTTGATGTGAAGCAAAAGGAGCAACCAGCAGCAGCCGACACATTCCTT
GGATTTGTTCCACAGAAGAGAATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAAT
GAGGATTCTAGAGCTCCATTGCTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGA
GCCGGAGAACGCCTCGGAGTCAACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAAT
CAATTCCAATAA
>Y74C9A.2a.3 cds chromosome:WBcel235:I:11505:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
ATGAAACTCGTAATTCTGCTATCTTTTGTTGCGACAGTTGCGGTTTTTGCGGCTCCATCG
GCTCCGGCAGGTCTCGAGGAGAAGCTGCGTGCTCTTCAGGAGCAACTGTACAGTCTGGAG
AAAGAGAACGGAGTTGATGTGAAGCAAAAGGAGCAACCAGCAGCAGCCGACACATTCCTT
GGATTTGTTCCACAGAAGAGAATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAAT
GAGGATTCTAGAGCTCCATTGCTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGA
GCCGGAGAACGCCTCGGAGTCAACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAAT
CAATTCCAATAA
>Y74C9A.2b.1 cds chromosome:WBcel235:I:11499:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
>Y74C9A.2b.2 cds chromosome:WBcel235:I:11495:16793:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
>Y74C9A.2b.3 cds chromosome:WBcel235:I:11623:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
>Y74C9A.2b.4 cds chromosome:WBcel235:I:11499:16842:1 gene:WBGene00022276 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nlp-40 description:Neuropeptide-Like Protein  [Source:RefSeq peptide;Acc:NP_001293206]
ATGGTCGCGTGGCAGCCGATGAAGCGGTCGATGATCAATGAGGATTCTAGAGCTCCATTG
CTCCACGCAATCGAAGCCCGCTTGGCCGAAGTGTTGAGAGCCGGAGAACGCCTCGGAGTC
AACCCGGAGGAAGTTTTGGCGGATCTTCGTGCTCGTAATCAATTCCAATAA
>Y74C9A.4a cds chromosome:WBcel235:I:17483:26781:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog  [Source:RefSeq peptide;Acc:NP_001293207]
ATGGATTCGTACACGTCATCTGACGAAGACGCCTCTCGAAAAGAAAACGAAGGCTTGAAT
ATGTTGAATGCATCGCCGGAGCCAATGGAGGAAGATGATCCAGAGGAGCAGGCGGAACAA
GAAGAAGAAACCAGCAGAATGGCTCGTCCTATAAGATCCATGAGAAAACGCGAAACAACG
TCTGGGGAATCAATGGGCGATGAGGATGAAGATTTGGAGGATGAAGAGGACGAAGATGAA
GAAGCTGAAGCTCGTGAGCATCATGAAAGTGGTGCTCATGACACATCTTTCTCAAATCCA
CTTTCCAACGTCGACAATCTAATCCACGTGGGAACCGAATATCAGGCGATTATACAGCCA
ACTGCAGAGCAATTGGAAAAAGAACCGTGCAGAGATCAACAAATTTGGGCGTTTCCAGAC
GAAATGAACGAGAATCGGCTTACAGAATACATTTCAGAAGCTACTGGACGATATCAATTA
CCTATAGATAGGGCTCTGTTCATTCTGAACAAACAGTCAAATGATTTCGACGCTGCGATG
GTTCAAGCGATGAGAAGAAAAGAAATTCATGATGATTGGACGGCAGAAGAAATTAGTCTT
TTCTCCACTTGCTTCTTTCATTTCGGAAAACGGTTCAAGAAGATTCATGCGGCTATGCCC
CAACGCTCGCTTTCTTCCATTATCCAATACTATTACAACACGAAAAAAGTGCAAAACTAT
AAAACAATGATTAATGTGCATTTGAATGAAACCGACACTTATGATGAACTATTCAAAGAG
GTCAATCATTTGGAGAGGGTTCCGTCGGGATATTGTGAGAATTGCAATGCAAAAAGTGAT
CTGTTGATTCTAAATCGTGTAATGTCGCGTCACGAATGTAAACCGTGTATCCTTTATTTC
CGTTTGATGCGTGTTCCACGTCCGGCAAGCCTCCGTGCACTGACAAAACGACGGCAACGA
GTTTTATGTCCAGAATACATGAAAATTTATGTATACGGATATCTTGAGCTCATGGAGCCA
GCCAACGGAAAAGCGATCAAACGGCTTGGAATTGGAAAAGAAAAAGAAGAAGACGATGAT
ATTATGGTGGTCGACGACTGCCTTCTCCGTAAACCATCAGGCCCCTACATTGTGGAGCAA
TCGATTGAAGCTGATCCAATCGATGAGAATACGTGCAGAATGACACGGTGCTTCGATACA
CCGGCTGCACTGGCATTAATTGATAATATCAAGAGAAAACATCATATGTGTGTTCCACTT
GTTTGGAGAGTTAAACAAACGAAATGTATGGAGGAGAACGAAATTCTGAATGAAGAAGCC
CGTCAACAAATGTTCCGTGCAACAATGACATACAGCCGTGTACCAAAAGGAGAAATTGCA
AATTGGAAGAAAGATATGATGGCGTTGAAGGGAAGATTCGAGAGATTTACTCCTGAACTA
GATACTACTGCAACAAATGGCAATCGATCTGGAAAAGTCAGGATAAATTATGGTTGGAGT
CCTGAGGAAAAGAAGAATGCTATTAGATGTTTCCACTGGTACAAGGACAATTTCGAGTTG
ATCGCCGAGTTGATGGCCACAAAAACTGTGGAACAAATCAAAAAGTTCTATATGGACAAT
GAAAAGCTAATTTTGGAGTCAATCGACACGTATCGCGCCGAGCTCAAGTCAAAACTCGGC
AAATAA
>Y74C9A.4b cds chromosome:WBcel235:I:17483:26778:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog  [Source:RefSeq peptide;Acc:NP_001293207]
ATGGATTCGTACACGTCATCTGACGAAGACGCCTCTCGAAAAGAAAATATTTCAGACGAA
GGCTTGAATATGTTGAATGCATCGCCGGAGCCAATGGAGGAAGATGATCCAGAGGAGCAG
GCGGAACAAGAAGAAGAAACCAGCAGAATGGCTCGTCCTATAAGATCCATGAGAAAACGC
GAAACAACGTCTGGGGAATCAATGGGCGATGAGGATGAAGATTTGGAGGATGAAGAGGAC
GAAGATGAAGAAGCTGAAGCTCGTGAGCATCATGAAAGTGGTGCTCATGACACATCTTTC
TCAAATCCACTTTCCAACGTCGACAATCTAATCCACGTGGGAACCGAATATCAGGCGATT
ATACAGCCAACTGCAGAGCAATTGGAAAAAGAACCGTGCAGAGATCAACAAATTTGGGCG
TTTCCAGACGAAATGAACGAGAATCGGCTTACAGAATACATTTCAGAAGCTACTGGACGA
TATCAATTACCTATAGATAGGGCTCTGTTCATTCTGAACAAACAGTCAAATGATTTCGAC
GCTGCGATGGTTCAAGCGATGAGAAGAAAAGAAATTCATGATGATTGGACGGCAGAAGAA
ATTAGTCTTTTCTCCACTTGCTTCTTTCATTTCGGAAAACGGTTCAAGAAGATTCATGCG
GCTATGCCCCAACGCTCGCTTTCTTCCATTATCCAATACTATTACAACACGAAAAAAGTG
CAAAACTATAAAACAATGATTAATGTGCATTTGAATGAAACCGACACTTATGATGAACTA
TTCAAAGAGGTCAATCATTTGGAGAGGGTTCCGTCGGGATATTGTGAGAATTGCAATGCA
AAAAGTGATCTGTTGATTCTAAATCGTGTAATGTCGCGTCACGAATGTAAACCGTGTATC
CTTTATTTCCGTTTGATGCGTGTTCCACGTCCGGCAAGCCTCCGTGCACTGACAAAACGA
CGGCAACGAGTTTTATGTCCAGAATACATGAAAATTTATGTATACGGATATCTTGAGCTC
ATGGAGCCAGCCAACGGAAAAGCGATCAAACGGCTTGGAATTGGAAAAGAAAAAGAAGAA
GACGATGATATTATGGTGGTCGACGACTGCCTTCTCCGTAAACCATCAGGCCCCTACATT
GTGGAGCAATCGATTGAAGCTGATCCAATCGATGAGAATACGTGCAGAATGACACGGTGC
TTCGATACACCGGCTGCACTGGCATTAATTGATAATATCAAGAGAAAACATCATATGTGT
GTTCCACTTGTTTGGAGAGTTAAACAAACGAAATGTATGGAGGAGAACGAAATTCTGAAT
GAAGAAGCCCGTCAACAAATGTTCCGTGCAACAATGACATACAGCCGTGTACCAAAAGGA
GAAATTGCAAATTGGAAGAAAGATATGATGGCGTTGAAGGGAAGATTCGAGAGATTTACT
CCTGAACTAGATACTACTGCAACAAATGGCAATCGATCTGGAAAAGTCAGGATAAATTAT
GGTTGGAGTCCTGAGGAAAAGAAGAATGCTATTAGATGTTTCCACTGGTACAAGGACAAT
TTCGAGTTGATCGCCGAGTTGATGGCCACAAAAACTGTGGAACAAATCAAAAAGTTCTAT
ATGGACAATGAAAAGCTAATTTTGGAGTCAATCGACACGTATCGCGCCGAGCTCAAGTCA
AAACTCGGCAAATAA
>Y74C9A.4c cds chromosome:WBcel235:I:17483:26643:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog  [Source:RefSeq peptide;Acc:NP_001293207]
ATGGAGGAAGATGATCCAGAGGAGCAGGCGGAACAAGAAGAAGAAACCAGCAGAATGGCT
CGTCCTATAAGATCCATGAGAAAACGCGAAACAACGTCTGGGGAATCAATGGGCGATGAG
GATGAAGATTTGGAGGATGAAGAGGACGAAGATGAAGAAGCTGAAGCTCGTGAGCATCAT
GAAAGTGGTGCTCATGACACATCTTTCTCAAATCCACTTTCCAACGTCGACAATCTAATC
CACGTGGGAACCGAATATCAGGCGATTATACAGCCAACTGCAGAGCAATTGGAAAAAGAA
CCGTGCAGAGATCAACAAATTTGGGCGTTTCCAGACGAAATGAACGAGAATCGGCTTACA
GAATACATTTCAGAAGCTACTGGACGATATCAATTACCTATAGATAGGGCTCTGTTCATT
CTGAACAAACAGTCAAATGATTTCGACGCTGCGATGGTTCAAGCGATGAGAAGAAAAGAA
ATTCATGATGATTGGACGGCAGAAGAAATTAGTCTTTTCTCCACTTGCTTCTTTCATTTC
GGAAAACGGTTCAAGAAGATTCATGCGGCTATGCCCCAACGCTCGCTTTCTTCCATTATC
CAATACTATTACAACACGAAAAAAGTGCAAAACTATAAAACAATGATTAATGTGCATTTG
AATGAAACCGACACTTATGATGAACTATTCAAAGAGGTCAATCATTTGGAGAGGGTTCCG
TCGGGATATTGTGAGAATTGCAATGCAAAAAGTGATCTGTTGATTCTAAATCGTGTAATG
TCGCGTCACGAATGTAAACCGTGTATCCTTTATTTCCGTTTGATGCGTGTTCCACGTCCG
GCAAGCCTCCGTGCACTGACAAAACGACGGCAACGAGTTTTATGTCCAGAATACATGAAA
ATTTATGTATACGGATATCTTGAGCTCATGGAGCCAGCCAACGGAAAAGCGATCAAACGG
CTTGGAATTGGAAAAGAAAAAGAAGAAGACGATGATATTATGGTGGTCGACGACTGCCTT
CTCCGTAAACCATCAGGCCCCTACATTGTGGAGCAATCGATTGAAGCTGATCCAATCGAT
GAGAATACGTGCAGAATGACACGGTGCTTCGATACACCGGCTGCACTGGCATTAATTGAT
AATATCAAGAGAAAACATCATATGTGTGTTCCACTTGTTTGGAGAGTTAAACAAACGAAA
TGTATGGAGGAGAACGAAATTCTGAATGAAGAAGCCCGTCAACAAATGTTCCGTGCAACA
ATGACATACAGCCGTGTACCAAAAGGAGAAATTGCAAATTGGAAGAAAGATATGATGGCG
TTGAAGGGAAGATTCGAGAGATTTACTCCTGAACTAGATACTACTGCAACAAATGGCAAT
CGATCTGGAAAAGTCAGGATAAATTATGGTTGGAGTCCTGAGGAAAAGAAGAATGCTATT
AGATGTTTCCACTGGTACAAGGACAATTTCGAGTTGATCGCCGAGTTGATGGCCACAAAA
ACTGTGGAACAAATCAAAAAGTTCTATATGGACAATGAAAAGCTAATTTTGGAGTCAATC
GACACGTATCGCGCCGAGCTCAAGTCAAAACTCGGCAAATAA
>Y74C9A.4d cds chromosome:WBcel235:I:17483:24796:-1 gene:WBGene00022278 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rcor-1 description:RCOR (REST CO-Repressor) homolog  [Source:RefSeq peptide;Acc:NP_001293207]
ATGTCGCGTCACGAATGTAAACCGTGTATCCTTTATTTCCGTTTGATGCGTGTTCCACGT
CCGGCAAGCCTCCGTGCACTGACAAAACGACGGCAACGAGTTTTATGTCCAGAATACATG
AAAATTTATGTATACGGATATCTTGAGCTCATGGAGCCAGCCAACGGAAAAGCGATCAAA
CGGCTTGGAATTGGAAAAGAAAAAGAAGAAGACGATGATATTATGGTGGTCGACGACTGC
CTTCTCCGTAAACCATCAGGCCCCTACATTGTGGAGCAATCGATTGAAGCTGATCCAATC
GATGAGAATACGTGCAGAATGACACGGTGCTTCGATACACCGGCTGCACTGGCATTAATT
GATAATATCAAGAGAAAACATCATATGTGTGTTCCACTTGTTTGGAGAGTTAAACAAACG
AAATGTATGGAGGAGAACGAAATTCTGAATGAAGAAGCCCGTCAACAAATGTTCCGTGCA
ACAATGACATACAGCCGTGTACCAAAAGGAGAAATTGCAAATTGGAAGAAAGATATGATG
GCGTTGAAGGGAAGATTCGAGAGATTTACTCCTGAACTAGATACTACTGCAACAAATGGC
AATCGATCTGGAAAAGTCAGGATAAATTATGGTTGGAGTCCTGAGGAAAAGAAGAATGCT
ATTAGATGTTTCCACTGGTACAAGGACAATTTCGAGTTGATCGCCGAGTTGATGGCCACA
AAAACTGTGGAACAAATCAAAAAGTTCTATATGGACAATGAAAAGCTAATTTTGGAGTCA
ATCGACACGTATCGCGCCGAGCTCAAGTCAAAACTCGGCAAATAA