Mercurial > repos > earlhaminst > lotus2
comparison lotus2.xml @ 18:6c22795e1be0 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/lotus2 commit afdb7dbe3283ee64d3aa2277efe505c7341575d8
| author | earlhaminst |
|---|---|
| date | Fri, 18 Nov 2022 08:55:22 +0000 |
| parents | 28f284a679ce |
| children | a3d31a68f291 |
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| 17:28f284a679ce | 18:6c22795e1be0 |
|---|---|
| 1 <tool id="lotus2" name="LotuS2" version="@VERSION@" profile="20.09"> | 1 <tool id="lotus2" name="LotuS2" version="@VERSION@+galaxy1" profile="20.09"> |
| 2 <description>fast OTU processing pipeline</description> | 2 <description>fast OTU processing pipeline</description> |
| 3 <macros> | 3 <macros> |
| 4 <token name="@VERSION@">2.21</token> | 4 <token name="@VERSION@">2.21</token> |
| 5 <xml name="refDB_macro" token_ref_fasta_formats="fasta,fasta.gz"> | 5 <xml name="refDB_macro" token_ref_fasta_formats="fasta,fasta.gz"> |
| 6 <conditional name="refDB_cond"> | 6 <conditional name="refDB_cond"> |
| 81 #if not $map: | 81 #if not $map: |
| 82 cat '$generated_mapping' && | 82 cat '$generated_mapping' && |
| 83 #set map = $generated_mapping | 83 #set map = $generated_mapping |
| 84 #end if | 84 #end if |
| 85 | 85 |
| 86 set +e && | |
| 87 | |
| 86 lotus2 | 88 lotus2 |
| 87 -i input/ | 89 -i input/ |
| 88 -o output | 90 -o output |
| 89 -tmpDir tmp_folder | 91 -tmpDir tmp_folder |
| 90 -threads "\${GALAXY_SLOTS:-1}" | 92 -threads "\${GALAXY_SLOTS:-1}" |