Mercurial > repos > earlhaminst > lotus2
changeset 19:a3d31a68f291 draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/lotus2 commit 3d69a14f20c8088412cf3729814be721b0db778c
| author | earlhaminst |
|---|---|
| date | Mon, 21 Nov 2022 11:49:15 +0000 |
| parents | 6c22795e1be0 |
| children | 1d660ee0b1c8 |
| files | lotus2.xml test-data/Arabidopsis_R1.fastqsanger.gz test-data/Arabidopsis_R2.fastqsanger.gz |
| diffstat | 3 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/lotus2.xml Fri Nov 18 08:55:22 2022 +0000 +++ b/lotus2.xml Mon Nov 21 11:49:15 2022 +0000 @@ -1,4 +1,4 @@ -<tool id="lotus2" name="LotuS2" version="@VERSION@+galaxy1" profile="20.09"> +<tool id="lotus2" name="LotuS2" version="@VERSION@+galaxy2" profile="20.09"> <description>fast OTU processing pipeline</description> <macros> <token name="@VERSION@">2.21</token> @@ -305,7 +305,7 @@ <param argument="-keepUnclassified" type="boolean" truevalue="1" falsevalue="0" checked="true" label="Keep unclassified OTUs" help="Includes unclassified OTUs (i.e. no match in RDP/Blast database) in OTU and taxa abundance matrix calculations" /> <param argument="-LCA_cover" type="float" min="0" max="1" value="" optional="true" label="Minimum horizontal coverage of an OTU sequence against ref DB (optional)"/> <param argument="-LCA_frac" type="float" min="0" max="1" value="" optional="true" label="Minimum fraction of reads with identical taxonomy (optional)"/> - <param argument="-lulu" type="boolean" truevalue="1" falsevalue="0" checked="true" label="Use LULU to merge OTUs based on their occurrence" /> + <param argument="-lulu" type="boolean" truevalue="1" falsevalue="0" checked="false" label="Use LULU to merge OTUs based on their occurrence" /> <param argument="-buildPhylo" type="select" label="Build OTU phylogeny"> <option value="0">Disable</option> <option value="1" selected="true">Use fasttree2</option>