Mercurial > repos > earlhaminst > miranda
annotate miranda_parser.py @ 3:ed25cd2323a7 draft default tip
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/main/tools/miranda commit 457bb20f9c1c007b42d79b08527f5c558529ab8a-dirty
author | earlhaminst |
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date | Mon, 24 Feb 2025 17:08:56 +0000 |
parents | 05bc31ccc323 |
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05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
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1 import sys |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
2 |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
3 # get hits from miranda scans |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
4 with open(sys.argv[1]) as infile1: |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
5 with open(sys.argv[2], "w") as outfile: |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
6 for line1 in infile1: |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
7 if "%" in line1 and "Forward:" not in line1: |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
8 outfile.write(line1) |