Mercurial > repos > earlhaminst > miranda
annotate miranda_parser.py @ 2:9c8ff1bdd041 draft default tip
"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit a9aa47b387ab4d4ee8628956aaea80d7aabca936"
author | earlhaminst |
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date | Mon, 21 Dec 2020 17:17:34 +0000 |
parents | 05bc31ccc323 |
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05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
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1 import sys |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
2 |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
3 # get hits from miranda scans |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
4 with open(sys.argv[1]) as infile1: |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
5 with open(sys.argv[2], "w") as outfile: |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
6 for line1 in infile1: |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
7 if "%" in line1 and "Forward:" not in line1: |
05bc31ccc323
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/miranda commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty
earlhaminst
parents:
diff
changeset
|
8 outfile.write(line1) |