Mercurial > repos > earlhaminst > replace_chromosome_names

diff test-data/GRCh37_ensembl2UCSC.txt @ 0:97c11d04cd4c draft

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planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/replace_chromosome_names/ commit 588282bf5cbb9909ad9cd8c316ec33158c858727
author earlhaminst
date Thu, 18 May 2017 14:17:48 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/GRCh37_ensembl2UCSC.txt	Thu May 18 14:17:48 2017 -0400
@@ -0,0 +1,297 @@
+1	chr1
+2	chr2
+3	chr3
+4	chr4
+5	chr5
+6	chr6
+7	chr7
+8	chr8
+9	chr9
+10	chr10
+11	chr11
+12	chr12
+13	chr13
+14	chr14
+15	chr15
+16	chr16
+17	chr17
+18	chr18
+19	chr19
+20	chr20
+21	chr21
+22	chr22
+X	chrX
+Y	chrY
+MT	chrM
+GL000191.1	chr1_gl000191_random
+GL000192.1	chr1_gl000192_random
+GL000193.1	chr4_gl000193_random
+GL000194.1	chr4_gl000194_random
+GL000195.1	chr7_gl000195_random
+GL000196.1	chr8_gl000196_random
+GL000197.1	chr8_gl000197_random
+GL000198.1	chr9_gl000198_random
+GL000199.1	chr9_gl000199_random
+GL000200.1	chr9_gl000200_random
+GL000201.1	chr9_gl000201_random
+GL000202.1	chr11_gl000202_random
+GL000203.1	chr17_gl000203_random
+GL000204.1	chr17_gl000204_random
+GL000205.1	chr17_gl000205_random
+GL000206.1	chr17_gl000206_random
+GL000207.1	chr18_gl000207_random
+GL000208.1	chr19_gl000208_random
+GL000209.1	chr19_gl000209_random
+GL000210.1	chr21_gl000210_random
+GL000211.1	chrUn_gl000211
+GL000212.1	chrUn_gl000212
+GL000213.1	chrUn_gl000213
+GL000214.1	chrUn_gl000214
+GL000215.1	chrUn_gl000215
+GL000216.1	chrUn_gl000216
+GL000217.1	chrUn_gl000217
+GL000218.1	chrUn_gl000218
+GL000219.1	chrUn_gl000219
+GL000220.1	chrUn_gl000220
+GL000221.1	chrUn_gl000221
+GL000222.1	chrUn_gl000222
+GL000223.1	chrUn_gl000223
+GL000224.1	chrUn_gl000224
+GL000225.1	chrUn_gl000225
+GL000226.1	chrUn_gl000226
+GL000227.1	chrUn_gl000227
+GL000228.1	chrUn_gl000228
+GL000229.1	chrUn_gl000229
+GL000230.1	chrUn_gl000230
+GL000231.1	chrUn_gl000231
+GL000232.1	chrUn_gl000232
+GL000233.1	chrUn_gl000233
+GL000234.1	chrUn_gl000234
+GL000235.1	chrUn_gl000235
+GL000236.1	chrUn_gl000236
+GL000237.1	chrUn_gl000237
+GL000238.1	chrUn_gl000238
+GL000239.1	chrUn_gl000239
+GL000240.1	chrUn_gl000240
+GL000241.1	chrUn_gl000241
+GL000242.1	chrUn_gl000242
+GL000243.1	chrUn_gl000243
+GL000244.1	chrUn_gl000244
+GL000245.1	chrUn_gl000245
+GL000246.1	chrUn_gl000246
+GL000247.1	chrUn_gl000247
+GL000248.1	chrUn_gl000248
+GL000249.1	chrUn_gl000249
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+HG1442_PATCH	
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+HG144_PATCH	
+HG1453_PATCH	
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+HG497_PATCH	
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+HSCHR1_2_CTG31	
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+HSCHR19LRC_COX1_CTG1	
+HSCHR19LRC_COX2_CTG1	
+HSCHR19LRC_LRC_I_CTG1	
+HSCHR19LRC_LRC_J_CTG1	
+HSCHR19LRC_LRC_S_CTG1	
+HSCHR19LRC_LRC_T_CTG1	
+HSCHR19LRC_PGF1_CTG1	
+HSCHR19LRC_PGF2_CTG1	
+HSCHR20_1_CTG1	
+HSCHR21_1_CTG1_1	
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+HSCHR21_3_CTG1_1	
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+HSCHR2_1_CTG1	
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+HSCHR4_1	chr4_ctg9_hap1
+HSCHR6_MHC_APD	chr6_apd_hap1
+HSCHR6_MHC_COX	chr6_cox_hap2
+HSCHR6_MHC_DBB	chr6_dbb_hap3
+HSCHR6_MHC_MANN	chr6_mann_hap4
+HSCHR6_MHC_MCF	chr6_mcf_hap5
+HSCHR6_MHC_QBL	chr6_qbl_hap6
+HSCHR6_MHC_SSTO	chr6_ssto_hap7
+HSCHR17_1	chr17_ctg5_hap1