# HG changeset patch
# User earlhaminst
# Date 1608611352 0
# Node ID 8c24cc7431aa5959ad6af9c26aae5ae2e60a74c5
# Parent  a3b26189fee347c30e82042ed117e5afc4e351f4
"planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/smart_domains commit 411fa9c106996050b2d2e8027e14d2068f6b14c3"

diff -r a3b26189fee3 -r 8c24cc7431aa smart_domains.xml
--- a/smart_domains.xml	Thu Jun 15 07:52:09 2017 -0400
+++ b/smart_domains.xml	Tue Dec 22 04:29:12 2020 +0000
@@ -42,18 +42,18 @@
             <param name="Schnipsel" value="false" />
             <param name="outputFormat" value="--outputFormat=txt" />
             <output_collection name="output_lists" type="list" count="12">
-                <element name="ENSCAFP00000021307" file="ENSCAFP00000021307_SMART_results.txt" ftype="txt" />
-                <element name="ENSCAFP00000021330" file="ENSCAFP00000021330_SMART_results.txt" ftype="txt" />
-                <element name="ENSMUSP00000026013" file="ENSMUSP00000026013_SMART_results.txt" ftype="txt" />
-                <element name="ENSMUSP00000040550" file="ENSMUSP00000040550_SMART_results.txt" ftype="txt" />
-                <element name="ENSP00000340684" file="ENSP00000340684_SMART_results.txt" ftype="txt" />
-                <element name="ENSP00000367309" file="ENSP00000367309_SMART_results.txt" ftype="txt" />
-                <element name="ENSPTRP00000037440" file="ENSPTRP00000037440_SMART_results.txt" ftype="txt" />
-                <element name="ENSPTRP00000037441" file="ENSPTRP00000037441_SMART_results.txt" ftype="txt" />
-                <element name="ENSRNOP00000043466" file="ENSRNOP00000043466_SMART_results.txt" ftype="txt" />
-                <element name="ENSRNOP00000063784" file="ENSRNOP00000063784_SMART_results.txt" ftype="txt" />
-                <element name="ENSSSCP00000013044" file="ENSSSCP00000013044_SMART_results.txt" ftype="txt" />
-                <element name="ENSSSCP00000028353" file="ENSSSCP00000028353_SMART_results.txt" ftype="txt" />
+                <element name="ENSCAFP00000021307" file="ENSCAFP00000021307_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSCAFP00000021330" file="ENSCAFP00000021330_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSMUSP00000026013" file="ENSMUSP00000026013_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSMUSP00000040550" file="ENSMUSP00000040550_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSP00000340684" file="ENSP00000340684_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSP00000367309" file="ENSP00000367309_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSPTRP00000037440" file="ENSPTRP00000037440_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSPTRP00000037441" file="ENSPTRP00000037441_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSRNOP00000043466" file="ENSRNOP00000043466_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSRNOP00000063784" file="ENSRNOP00000063784_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSSSCP00000013044" file="ENSSSCP00000013044_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSSSCP00000028353" file="ENSSSCP00000028353_SMART_results.txt" ftype="txt" compare="sim_size" delta_frac="0.1" />
             </output_collection>
         </test>
         <test>
@@ -65,18 +65,18 @@
             <param name="Schnipsel" value="false" />
             <param name="outputFormat" value="--outputFormat=json" />
             <output_collection name="output_lists" type="list" count="12">
-                <element name="ENSCAFP00000021307" file="ENSCAFP00000021307_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSCAFP00000021330" file="ENSCAFP00000021330_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSMUSP00000026013" file="ENSMUSP00000026013_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSMUSP00000040550" file="ENSMUSP00000040550_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSP00000340684" file="ENSP00000340684_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSP00000367309" file="ENSP00000367309_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSPTRP00000037440" file="ENSPTRP00000037440_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSPTRP00000037441" file="ENSPTRP00000037441_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSRNOP00000043466" file="ENSRNOP00000043466_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSRNOP00000063784" file="ENSRNOP00000063784_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSSSCP00000013044" file="ENSSSCP00000013044_SMART_results.json" ftype="json" compare="sim_size" />
-                <element name="ENSSSCP00000028353" file="ENSSSCP00000028353_SMART_results.json" ftype="json" compare="sim_size" />
+                <element name="ENSCAFP00000021307" file="ENSCAFP00000021307_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSCAFP00000021330" file="ENSCAFP00000021330_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSMUSP00000026013" file="ENSMUSP00000026013_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSMUSP00000040550" file="ENSMUSP00000040550_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSP00000340684" file="ENSP00000340684_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSP00000367309" file="ENSP00000367309_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSPTRP00000037440" file="ENSPTRP00000037440_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSPTRP00000037441" file="ENSPTRP00000037441_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSRNOP00000043466" file="ENSRNOP00000043466_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSRNOP00000063784" file="ENSRNOP00000063784_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSSSCP00000013044" file="ENSSSCP00000013044_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
+                <element name="ENSSSCP00000028353" file="ENSSSCP00000028353_SMART_results.json" ftype="json" compare="sim_size" delta_frac="0.1" />
             </output_collection>
         </test>
     </tests>
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSCAFP00000021307_SMART_results.json
--- a/test-data/ENSCAFP00000021307_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSCAFP00000021307_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"START":"13","END":"62","STATUS":"visible|OK","DOMAIN":"Pfam:FAD_binding_3","EVALUE":"5.7e-07","TYPE":"PFAM"},{"TYPE":"PFAM","EVALUE":"3.7e-06","END":"58","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:Pyr_redox"},{"EVALUE":"2e-09","TYPE":"PFAM","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","END":"159","START":"15"},{"END":"55","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM","EVALUE":"2.7e-07"},{"START":"16","END":"33","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region","EVALUE":"0","TYPE":"INTRINSIC"},{"EVALUE":"5.8e-16","TYPE":"PFAM","START":"18","END":"84","STATUS":"visible|OK","DOMAIN":"Pfam:NAD_binding_8"},{"TYPE":"PFAM","EVALUE":"4.8e-76","DOMAIN":"Pfam:Amino_oxidase","START":"23","STATUS":"visible|OK","END":"460"},{"END":"71","STATUS":"hidden|overlap","START":"60","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0"},{"START":"497","END":"519","STATUS":"visible|OK","DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC","EVALUE":"0"}]
\ No newline at end of file
+[{"END":"62","STATUS":"visible|OK","START":"13","EVALUE":"1.4e-06","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3"},{"EVALUE":"3.1e-09","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:DAO","TYPE":"PFAM","END":"160"},{"END":"55","STATUS":"visible|OK","EVALUE":"6.1e-07","START":"15","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM"},{"DOMAIN":"Pfam:Pyr_redox","TYPE":"PFAM","STATUS":"visible|OK","EVALUE":"6.5e-06","START":"15","END":"58"},{"STATUS":"hidden|overlap","EVALUE":"0","START":"16","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","END":"33"},{"END":"84","START":"18","STATUS":"visible|OK","EVALUE":"2.2e-15","DOMAIN":"Pfam:NAD_binding_8","TYPE":"PFAM"},{"END":"460","STATUS":"visible|OK","EVALUE":"3.6e-75","START":"23","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase"},{"END":"71","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","EVALUE":"0","STATUS":"hidden|overlap","START":"60"},{"END":"519","DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC","START":"497","STATUS":"visible|OK","EVALUE":"0"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSCAFP00000021307_SMART_results.txt
--- a/test-data/ENSCAFP00000021307_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSCAFP00000021307_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -6,28 +6,28 @@
 DOMAIN=Pfam:FAD_binding_3
 START=13
 END=62
-EVALUE=5.7e-07
+EVALUE=1.4e-06
+TYPE=PFAM
+STATUS=visible|OK
+
+DOMAIN=Pfam:DAO
+START=15
+END=160
+EVALUE=3.1e-09
+TYPE=PFAM
+STATUS=visible|OK
+
+DOMAIN=Pfam:FAD_binding_2
+START=15
+END=55
+EVALUE=6.1e-07
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Pyr_redox
 START=15
 END=58
-EVALUE=3.7e-06
-TYPE=PFAM
-STATUS=visible|OK
-
-DOMAIN=Pfam:DAO
-START=15
-END=159
-EVALUE=2e-09
-TYPE=PFAM
-STATUS=visible|OK
-
-DOMAIN=Pfam:FAD_binding_2
-START=15
-END=55
-EVALUE=2.7e-07
+EVALUE=6.5e-06
 TYPE=PFAM
 STATUS=visible|OK
 
@@ -41,14 +41,14 @@
 DOMAIN=Pfam:NAD_binding_8
 START=18
 END=84
-EVALUE=5.8e-16
+EVALUE=2.2e-15
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Amino_oxidase
 START=23
 END=460
-EVALUE=4.8e-76
+EVALUE=3.6e-75
 TYPE=PFAM
 STATUS=visible|OK
 
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSCAFP00000021330_SMART_results.json
--- a/test-data/ENSCAFP00000021330_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSCAFP00000021330_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"START":"9","STATUS":"visible|OK","END":"75","DOMAIN":"Pfam:NAD_binding_8","EVALUE":"7.9e-15","TYPE":"PFAM"},{"EVALUE":"2.4e-79","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","START":"14","STATUS":"visible|OK","END":"451"},{"EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","START":"437","STATUS":"hidden|overlap","END":"449"},{"START":"490","END":"512","STATUS":"visible|OK","DOMAIN":"transmembrane_domain","EVALUE":"0","TYPE":"INTRINSIC"}]
\ No newline at end of file
+[{"END":"75","START":"9","STATUS":"visible|OK","EVALUE":"3.5e-14","DOMAIN":"Pfam:NAD_binding_8","TYPE":"PFAM"},{"DOMAIN":"Pfam:Amino_oxidase","TYPE":"PFAM","STATUS":"visible|OK","EVALUE":"2e-78","START":"14","END":"451"},{"END":"449","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0","STATUS":"hidden|overlap","START":"437"},{"TYPE":"INTRINSIC","DOMAIN":"transmembrane_domain","EVALUE":"0","STATUS":"visible|OK","START":"490","END":"512"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSCAFP00000021330_SMART_results.txt
--- a/test-data/ENSCAFP00000021330_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSCAFP00000021330_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -6,14 +6,14 @@
 DOMAIN=Pfam:NAD_binding_8
 START=9
 END=75
-EVALUE=7.9e-15
+EVALUE=3.5e-14
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Amino_oxidase
 START=14
 END=451
-EVALUE=2.4e-79
+EVALUE=2e-78
 TYPE=PFAM
 STATUS=visible|OK
 
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSMUSP00000026013_SMART_results.json
--- a/test-data/ENSMUSP00000026013_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSMUSP00000026013_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"END":"168","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:DAO","TYPE":"PFAM","EVALUE":"1.5e-08"},{"END":"55","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM","EVALUE":"4.4e-06"},{"END":"84","STATUS":"visible|OK","START":"18","DOMAIN":"Pfam:NAD_binding_8","EVALUE":"5.3e-16","TYPE":"PFAM"},{"START":"23","END":"460","STATUS":"visible|OK","DOMAIN":"Pfam:Amino_oxidase","EVALUE":"5.4e-73","TYPE":"PFAM"},{"END":"459","STATUS":"hidden|overlap","START":"446","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0"}]
\ No newline at end of file
+[{"END":"55","STATUS":"visible|OK","EVALUE":"9.8e-06","START":"15","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM"},{"START":"15","STATUS":"visible|OK","EVALUE":"2.5e-08","TYPE":"PFAM","DOMAIN":"Pfam:DAO","END":"161"},{"DOMAIN":"Pfam:NAD_binding_8","TYPE":"PFAM","EVALUE":"2e-15","STATUS":"visible|OK","START":"18","END":"84"},{"END":"460","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","STATUS":"visible|OK","START":"23","EVALUE":"6.8e-72"},{"DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","STATUS":"hidden|overlap","START":"446","EVALUE":"0","END":"459"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSMUSP00000026013_SMART_results.txt
--- a/test-data/ENSMUSP00000026013_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSMUSP00000026013_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -3,31 +3,31 @@
 CRC_PASSED=1
 NUMBER_OF_FEATURES_FOUND=5
 
-DOMAIN=Pfam:DAO
+DOMAIN=Pfam:FAD_binding_2
 START=15
-END=168
-EVALUE=1.5e-08
+END=55
+EVALUE=9.8e-06
 TYPE=PFAM
 STATUS=visible|OK
 
-DOMAIN=Pfam:FAD_binding_2
+DOMAIN=Pfam:DAO
 START=15
-END=55
-EVALUE=4.4e-06
+END=161
+EVALUE=2.5e-08
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:NAD_binding_8
 START=18
 END=84
-EVALUE=5.3e-16
+EVALUE=2e-15
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Amino_oxidase
 START=23
 END=460
-EVALUE=5.4e-73
+EVALUE=6.8e-72
 TYPE=PFAM
 STATUS=visible|OK
 
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSMUSP00000040550_SMART_results.json
--- a/test-data/ENSMUSP00000040550_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSMUSP00000040550_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"EVALUE":"7.9e-08","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2","START":"6","STATUS":"visible|OK","END":"45"},{"TYPE":"INTRINSIC","EVALUE":"0","END":"14","STATUS":"hidden|overlap","START":"7","DOMAIN":"low_complexity_region"},{"EVALUE":"4.1e-16","TYPE":"PFAM","START":"9","END":"75","STATUS":"visible|OK","DOMAIN":"Pfam:NAD_binding_8"},{"EVALUE":"7.6e-75","TYPE":"PFAM","START":"14","END":"451","STATUS":"visible|OK","DOMAIN":"Pfam:Amino_oxidase"},{"TYPE":"INTRINSIC","EVALUE":"0","DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"449","START":"437"}]
\ No newline at end of file
+[{"START":"6","STATUS":"visible|OK","EVALUE":"1.8e-07","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2","END":"45"},{"START":"7","STATUS":"hidden|overlap","EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","END":"14"},{"TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","START":"9","STATUS":"visible|OK","EVALUE":"1.3e-15","END":"75"},{"END":"451","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","START":"14","STATUS":"visible|OK","EVALUE":"5.4e-74"},{"END":"449","START":"437","STATUS":"hidden|overlap","EVALUE":"0","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSMUSP00000040550_SMART_results.txt
--- a/test-data/ENSMUSP00000040550_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSMUSP00000040550_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -6,7 +6,7 @@
 DOMAIN=Pfam:FAD_binding_2
 START=6
 END=45
-EVALUE=7.9e-08
+EVALUE=1.8e-07
 TYPE=PFAM
 STATUS=visible|OK
 
@@ -20,14 +20,14 @@
 DOMAIN=Pfam:NAD_binding_8
 START=9
 END=75
-EVALUE=4.1e-16
+EVALUE=1.3e-15
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Amino_oxidase
 START=14
 END=451
-EVALUE=7.6e-75
+EVALUE=5.4e-74
 TYPE=PFAM
 STATUS=visible|OK
 
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSP00000340684_SMART_results.json
--- a/test-data/ENSP00000340684_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSP00000340684_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"EVALUE":"5.7e-09","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3","STATUS":"visible|OK","END":"64","START":"13"},{"EVALUE":"5.5e-07","TYPE":"PFAM","END":"61","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:Pyr_redox"},{"END":"108","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:DAO","EVALUE":"4.6e-09","TYPE":"PFAM"},{"EVALUE":"7.2e-07","TYPE":"PFAM","END":"55","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:FAD_binding_2"},{"DOMAIN":"low_complexity_region","START":"16","STATUS":"hidden|overlap","END":"23","EVALUE":"0","TYPE":"INTRINSIC"},{"DOMAIN":"Pfam:NAD_binding_8","START":"18","STATUS":"visible|OK","END":"84","TYPE":"PFAM","EVALUE":"4.4e-16"},{"EVALUE":"3.5e-76","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","START":"23","STATUS":"visible|OK","END":"460"},{"END":"71","STATUS":"hidden|overlap","START":"60","DOMAIN":"low_complexity_region","EVALUE":"0","TYPE":"INTRINSIC"},{"DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"459","START":"446","EVALUE":"0","TYPE":"INTRINSIC"}]
\ No newline at end of file
+[{"TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3","STATUS":"visible|OK","START":"13","EVALUE":"1.4e-08","END":"64"},{"END":"55","START":"15","STATUS":"visible|OK","EVALUE":"1.6e-06","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM"},{"EVALUE":"9.6e-09","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:DAO","TYPE":"PFAM","END":"110"},{"TYPE":"PFAM","DOMAIN":"Pfam:Pyr_redox","STATUS":"visible|OK","EVALUE":"9.6e-07","START":"15","END":"61"},{"END":"23","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0","STATUS":"hidden|overlap","START":"16"},{"START":"18","STATUS":"visible|OK","EVALUE":"2e-15","TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","END":"84"},{"END":"460","STATUS":"visible|OK","EVALUE":"2.3e-75","START":"23","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase"},{"DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0","STATUS":"hidden|overlap","START":"60","END":"71"},{"STATUS":"hidden|overlap","START":"446","EVALUE":"0","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","END":"459"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSP00000340684_SMART_results.txt
--- a/test-data/ENSP00000340684_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSP00000340684_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -6,28 +6,28 @@
 DOMAIN=Pfam:FAD_binding_3
 START=13
 END=64
-EVALUE=5.7e-09
+EVALUE=1.4e-08
+TYPE=PFAM
+STATUS=visible|OK
+
+DOMAIN=Pfam:FAD_binding_2
+START=15
+END=55
+EVALUE=1.6e-06
+TYPE=PFAM
+STATUS=visible|OK
+
+DOMAIN=Pfam:DAO
+START=15
+END=110
+EVALUE=9.6e-09
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Pyr_redox
 START=15
 END=61
-EVALUE=5.5e-07
-TYPE=PFAM
-STATUS=visible|OK
-
-DOMAIN=Pfam:DAO
-START=15
-END=108
-EVALUE=4.6e-09
-TYPE=PFAM
-STATUS=visible|OK
-
-DOMAIN=Pfam:FAD_binding_2
-START=15
-END=55
-EVALUE=7.2e-07
+EVALUE=9.6e-07
 TYPE=PFAM
 STATUS=visible|OK
 
@@ -41,14 +41,14 @@
 DOMAIN=Pfam:NAD_binding_8
 START=18
 END=84
-EVALUE=4.4e-16
+EVALUE=2e-15
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Amino_oxidase
 START=23
 END=460
-EVALUE=3.5e-76
+EVALUE=2.3e-75
 TYPE=PFAM
 STATUS=visible|OK
 
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSP00000367309_SMART_results.json
--- a/test-data/ENSP00000367309_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSP00000367309_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"EVALUE":"2.6e-07","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3","START":"4","STATUS":"visible|OK","END":"51"},{"DOMAIN":"Pfam:Pyr_redox","STATUS":"visible|OK","END":"51","START":"6","EVALUE":"4.5e-06","TYPE":"PFAM"},{"DOMAIN":"Pfam:DAO","STATUS":"visible|OK","END":"211","START":"6","TYPE":"PFAM","EVALUE":"2.7e-08"},{"DOMAIN":"Pfam:FAD_binding_2","STATUS":"visible|OK","END":"45","START":"6","TYPE":"PFAM","EVALUE":"1.3e-07"},{"TYPE":"PFAM","EVALUE":"6.4e-16","END":"75","STATUS":"visible|OK","START":"9","DOMAIN":"Pfam:NAD_binding_8"},{"END":"451","STATUS":"visible|OK","START":"14","DOMAIN":"Pfam:Amino_oxidase","TYPE":"PFAM","EVALUE":"5.6e-75"},{"START":"437","END":"449","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region","EVALUE":"0","TYPE":"INTRINSIC"},{"TYPE":"INTRINSIC","EVALUE":"0","DOMAIN":"transmembrane_domain","START":"490","STATUS":"visible|OK","END":"512"}]
\ No newline at end of file
+[{"EVALUE":"6.3e-07","STATUS":"visible|OK","START":"4","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3","END":"51"},{"TYPE":"PFAM","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","EVALUE":"4.1e-08","START":"6","END":"199"},{"END":"45","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2","STATUS":"visible|OK","START":"6","EVALUE":"2.8e-07"},{"END":"75","DOMAIN":"Pfam:NAD_binding_8","TYPE":"PFAM","STATUS":"visible|OK","START":"9","EVALUE":"2.1e-15"},{"END":"451","STATUS":"visible|OK","START":"14","EVALUE":"3.1e-74","DOMAIN":"Pfam:Amino_oxidase","TYPE":"PFAM"},{"DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","EVALUE":"0","STATUS":"hidden|overlap","START":"437","END":"449"},{"DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC","STATUS":"visible|OK","EVALUE":"0","START":"490","END":"512"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSP00000367309_SMART_results.txt
--- a/test-data/ENSP00000367309_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSP00000367309_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -1,47 +1,40 @@
 -- SMART RESULT TEXTFORMAT --
 
 CRC_PASSED=1
-NUMBER_OF_FEATURES_FOUND=8
+NUMBER_OF_FEATURES_FOUND=7
 
 DOMAIN=Pfam:FAD_binding_3
 START=4
 END=51
-EVALUE=2.6e-07
-TYPE=PFAM
-STATUS=visible|OK
-
-DOMAIN=Pfam:Pyr_redox
-START=6
-END=51
-EVALUE=4.5e-06
+EVALUE=6.3e-07
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:DAO
 START=6
-END=211
-EVALUE=2.7e-08
+END=199
+EVALUE=4.1e-08
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:FAD_binding_2
 START=6
 END=45
-EVALUE=1.3e-07
+EVALUE=2.8e-07
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:NAD_binding_8
 START=9
 END=75
-EVALUE=6.4e-16
+EVALUE=2.1e-15
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Amino_oxidase
 START=14
 END=451
-EVALUE=5.6e-75
+EVALUE=3.1e-74
 TYPE=PFAM
 STATUS=visible|OK
 
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSPTRP00000037440_SMART_results.json
--- a/test-data/ENSPTRP00000037440_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSPTRP00000037440_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"END":"64","STATUS":"visible|OK","START":"13","DOMAIN":"Pfam:FAD_binding_3","TYPE":"PFAM","EVALUE":"1.5e-09"},{"TYPE":"PFAM","EVALUE":"1.2e-07","END":"61","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:Pyr_redox"},{"EVALUE":"1.3e-09","TYPE":"PFAM","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","END":"130","START":"15"},{"DOMAIN":"Pfam:FAD_binding_2","STATUS":"visible|OK","END":"55","START":"15","EVALUE":"1.9e-07","TYPE":"PFAM"},{"TYPE":"INTRINSIC","EVALUE":"0","END":"23","STATUS":"hidden|overlap","START":"16","DOMAIN":"low_complexity_region"},{"EVALUE":"1.2e-16","TYPE":"PFAM","START":"18","END":"84","STATUS":"visible|OK","DOMAIN":"Pfam:NAD_binding_8"},{"DOMAIN":"Pfam:Amino_oxidase","START":"23","STATUS":"visible|OK","END":"460","EVALUE":"2.6e-76","TYPE":"PFAM"},{"TYPE":"INTRINSIC","EVALUE":"0","START":"60","END":"71","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region"},{"EVALUE":"0","TYPE":"INTRINSIC","START":"446","END":"459","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region"}]
\ No newline at end of file
+[{"END":"64","STATUS":"visible|OK","START":"13","EVALUE":"3.2e-08","DOMAIN":"Pfam:FAD_binding_3","TYPE":"PFAM"},{"END":"55","EVALUE":"2.5e-06","STATUS":"visible|OK","START":"15","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2"},{"END":"61","STATUS":"visible|OK","EVALUE":"1.7e-06","START":"15","TYPE":"PFAM","DOMAIN":"Pfam:Pyr_redox"},{"TYPE":"PFAM","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","START":"15","EVALUE":"1.3e-08","END":"152"},{"END":"23","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","STATUS":"hidden|overlap","EVALUE":"0","START":"16"},{"TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","STATUS":"visible|OK","START":"18","EVALUE":"4.2e-15","END":"84"},{"END":"460","START":"23","STATUS":"visible|OK","EVALUE":"5.8e-75","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase"},{"END":"71","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","START":"60","STATUS":"hidden|overlap","EVALUE":"0"},{"START":"446","STATUS":"hidden|overlap","EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","END":"459"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSPTRP00000037440_SMART_results.txt
--- a/test-data/ENSPTRP00000037440_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSPTRP00000037440_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -6,28 +6,28 @@
 DOMAIN=Pfam:FAD_binding_3
 START=13
 END=64
-EVALUE=1.5e-09
+EVALUE=3.2e-08
+TYPE=PFAM
+STATUS=visible|OK
+
+DOMAIN=Pfam:FAD_binding_2
+START=15
+END=55
+EVALUE=2.5e-06
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Pyr_redox
 START=15
 END=61
-EVALUE=1.2e-07
+EVALUE=1.7e-06
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:DAO
 START=15
-END=130
-EVALUE=1.3e-09
-TYPE=PFAM
-STATUS=visible|OK
-
-DOMAIN=Pfam:FAD_binding_2
-START=15
-END=55
-EVALUE=1.9e-07
+END=152
+EVALUE=1.3e-08
 TYPE=PFAM
 STATUS=visible|OK
 
@@ -41,14 +41,14 @@
 DOMAIN=Pfam:NAD_binding_8
 START=18
 END=84
-EVALUE=1.2e-16
+EVALUE=4.2e-15
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Amino_oxidase
 START=23
 END=460
-EVALUE=2.6e-76
+EVALUE=5.8e-75
 TYPE=PFAM
 STATUS=visible|OK
 
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSPTRP00000037441_SMART_results.json
--- a/test-data/ENSPTRP00000037441_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSPTRP00000037441_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"TYPE":"PFAM","EVALUE":"8.8e-08","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","END":"211","START":"6"},{"DOMAIN":"Pfam:FAD_binding_2","STATUS":"visible|OK","END":"45","START":"6","EVALUE":"1.2e-06","TYPE":"PFAM"},{"END":"75","STATUS":"visible|OK","START":"9","DOMAIN":"Pfam:NAD_binding_8","TYPE":"PFAM","EVALUE":"5.2e-15"},{"DOMAIN":"Pfam:Amino_oxidase","START":"14","STATUS":"visible|OK","END":"451","EVALUE":"7.1e-74","TYPE":"PFAM"},{"EVALUE":"0","TYPE":"INTRINSIC","START":"437","END":"449","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region"},{"EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"transmembrane_domain","STATUS":"visible|OK","END":"512","START":"490"}]
\ No newline at end of file
+[{"STATUS":"hidden|threshold","START":"1","EVALUE":"30933.3535994808","TYPE":"SMART","DOMAIN":"AlaDh_PNT_C","END":"92"},{"END":"52","EVALUE":"0.0077","STATUS":"hidden|threshold","START":"1","DOMAIN":"Pfam:IlvN","TYPE":"PFAM"},{"END":"47","EVALUE":"0.0003","STATUS":"hidden|threshold","START":"2","DOMAIN":"Pfam:Thi4","TYPE":"PFAM"},{"EVALUE":"0.0011","STATUS":"hidden|threshold","START":"2","TYPE":"PFAM","DOMAIN":"Pfam:Pyr_redox_2","END":"53"},{"END":"93","EVALUE":"0.0037","STATUS":"hidden|threshold","START":"2","DOMAIN":"Pfam:AlaDh_PNT_C","TYPE":"PFAM"},{"TYPE":"PFAM","DOMAIN":"Pfam:Pyr_redox_3","STATUS":"hidden|threshold","START":"3","EVALUE":"2.3","END":"88"},{"END":"51","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_3","STATUS":"hidden|threshold","EVALUE":"0.00015","START":"4"},{"TYPE":"PFAM","DOMAIN":"Pfam:HI0933_like","EVALUE":"0.017","STATUS":"hidden|threshold","START":"5","END":"44"},{"EVALUE":"33445.8578229311","STATUS":"hidden|threshold","START":"6","DOMAIN":"Semialdhyde_dh","TYPE":"SMART","END":"71"},{"STATUS":"hidden|threshold","START":"6","EVALUE":"6.8e-06","TYPE":"PFAM","DOMAIN":"Pfam:DAO","END":"199"},{"DOMAIN":"Pfam:FAD_oxidored","TYPE":"PFAM","EVALUE":"1.3e-05","STATUS":"hidden|threshold","START":"6","END":"51"},{"END":"45","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2","START":"6","STATUS":"visible|OK","EVALUE":"0.00014"},{"EVALUE":"0.0026","STATUS":"hidden|threshold","START":"6","DOMAIN":"Pfam:Pyr_redox","TYPE":"PFAM","END":"51"},{"END":"95","DOMAIN":"Pfam:GIDA","TYPE":"PFAM","EVALUE":"0.046","STATUS":"hidden|threshold","START":"6"},{"END":"54","DOMAIN":"Pfam:Lycopene_cycl","TYPE":"PFAM","STATUS":"hidden|threshold","EVALUE":"0.092","START":"6"},{"END":"41","START":"6","STATUS":"hidden|threshold","EVALUE":"0.32","DOMAIN":"Pfam:Trp_halogenase","TYPE":"PFAM"},{"STATUS":"hidden|threshold","EVALUE":"0.81","START":"6","TYPE":"PFAM","DOMAIN":"Pfam:3HCDH_N","END":"58"},{"END":"95","DOMAIN":"RHO","TYPE":"SMART","STATUS":"hidden|threshold","START":"7","EVALUE":"1408.30964173531"},{"STATUS":"hidden|threshold","EVALUE":"1.1","START":"7","DOMAIN":"Pfam:TrkA_N","TYPE":"PFAM","END":"56"},{"END":"75","STATUS":"visible|OK","EVALUE":"1e-12","START":"9","TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8"},{"TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","STATUS":"visible|OK","EVALUE":"3.2e-71","START":"14","END":"451"},{"END":"141","DOMAIN":"Fapy_DNA_glyco","TYPE":"SMART","START":"30","STATUS":"hidden|threshold","EVALUE":"84644.2966082717"},{"TYPE":"SMART","DOMAIN":"Dynein_light","START":"44","STATUS":"hidden|threshold","EVALUE":"51136.8774244005","END":"121"},{"DOMAIN":"GGL","TYPE":"SMART","STATUS":"hidden|threshold","START":"61","EVALUE":"571.480606829398","END":"121"},{"END":"179","START":"137","STATUS":"hidden|threshold","EVALUE":"1537.7843005764","TYPE":"SMART","DOMAIN":"PLP"},{"START":"137","STATUS":"hidden|threshold","EVALUE":"129170.041311882","DOMAIN":"DUF4187","TYPE":"SMART","END":"178"},{"TYPE":"PFAM","DOMAIN":"Pfam:Pyr_redox_2","START":"189","STATUS":"hidden|threshold","EVALUE":"7.2e+02","END":"265"},{"TYPE":"SMART","DOMAIN":"GIYc","START":"192","STATUS":"hidden|threshold","EVALUE":"865.846926520416","END":"274"},{"START":"193","STATUS":"hidden|threshold","EVALUE":"1251.28367939458","DOMAIN":"KH","TYPE":"SMART","END":"266"},{"END":"266","TYPE":"PFAM","DOMAIN":"Pfam:TrkA_N","STATUS":"hidden|threshold","EVALUE":"1.3e+02","START":"210"},{"START":"218","STATUS":"hidden|threshold","EVALUE":"19","DOMAIN":"Pfam:Pyr_redox_3","TYPE":"PFAM","END":"265"},{"STATUS":"hidden|threshold","EVALUE":"3.3e+03","START":"235","TYPE":"PFAM","DOMAIN":"Pfam:3HCDH_N","END":"282"},{"EVALUE":"8.1e+03","STATUS":"hidden|threshold","START":"329","DOMAIN":"Pfam:TrkA_N","TYPE":"PFAM","END":"375"},{"END":"377","DOMAIN":"DnaJ","TYPE":"SMART","START":"335","STATUS":"hidden|threshold","EVALUE":"476.301934189143"},{"END":"430","TYPE":"SMART","DOMAIN":"HELICc2","EVALUE":"239.70161728886","STATUS":"hidden|threshold","START":"337"},{"END":"363","DOMAIN":"DUF1713","TYPE":"SMART","STATUS":"hidden|threshold","EVALUE":"170644.3529947","START":"340"},{"END":"456","START":"392","STATUS":"hidden|threshold","EVALUE":"1.8e+02","TYPE":"PFAM","DOMAIN":"Pfam:GIDA"},{"END":"449","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","STATUS":"hidden|overlap","EVALUE":"0","START":"437"},{"END":"512","DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC","START":"490","STATUS":"visible|OK","EVALUE":"0"},{"TYPE":"SMART","DOMAIN":"IQ","STATUS":"hidden|threshold","EVALUE":"808.328375610961","START":"494","END":"516"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSPTRP00000037441_SMART_results.txt
--- a/test-data/ENSPTRP00000037441_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSPTRP00000037441_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -1,36 +1,268 @@
+
 -- SMART RESULT TEXTFORMAT --
 
-CRC_PASSED=1
-NUMBER_OF_FEATURES_FOUND=6
+CRC_PASSED=0
+NUMBER_OF_FEATURES_FOUND=40
+
+DOMAIN=AlaDh_PNT_C
+START=1
+END=92
+EVALUE=30933.3535994808
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:IlvN
+START=1
+END=52
+EVALUE=0.0077
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:Thi4
+START=2
+END=47
+EVALUE=0.0003
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:Pyr_redox_2
+START=2
+END=53
+EVALUE=0.0011
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:AlaDh_PNT_C
+START=2
+END=93
+EVALUE=0.0037
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:Pyr_redox_3
+START=3
+END=88
+EVALUE=2.3
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:FAD_binding_3
+START=4
+END=51
+EVALUE=0.00015
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:HI0933_like
+START=5
+END=44
+EVALUE=0.017
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Semialdhyde_dh
+START=6
+END=71
+EVALUE=33445.8578229311
+TYPE=SMART
+STATUS=hidden|threshold
 
 DOMAIN=Pfam:DAO
 START=6
-END=211
-EVALUE=8.8e-08
+END=199
+EVALUE=6.8e-06
 TYPE=PFAM
-STATUS=visible|OK
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:FAD_oxidored
+START=6
+END=51
+EVALUE=1.3e-05
+TYPE=PFAM
+STATUS=hidden|threshold
 
 DOMAIN=Pfam:FAD_binding_2
 START=6
 END=45
-EVALUE=1.2e-06
+EVALUE=0.00014
 TYPE=PFAM
 STATUS=visible|OK
 
+DOMAIN=Pfam:Pyr_redox
+START=6
+END=51
+EVALUE=0.0026
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:GIDA
+START=6
+END=95
+EVALUE=0.046
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:Lycopene_cycl
+START=6
+END=54
+EVALUE=0.092
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:Trp_halogenase
+START=6
+END=41
+EVALUE=0.32
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:3HCDH_N
+START=6
+END=58
+EVALUE=0.81
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=RHO
+START=7
+END=95
+EVALUE=1408.30964173531
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:TrkA_N
+START=7
+END=56
+EVALUE=1.1
+TYPE=PFAM
+STATUS=hidden|threshold
+
 DOMAIN=Pfam:NAD_binding_8
 START=9
 END=75
-EVALUE=5.2e-15
+EVALUE=1e-12
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Amino_oxidase
 START=14
 END=451
-EVALUE=7.1e-74
+EVALUE=3.2e-71
 TYPE=PFAM
 STATUS=visible|OK
 
+DOMAIN=Fapy_DNA_glyco
+START=30
+END=141
+EVALUE=84644.2966082717
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=Dynein_light
+START=44
+END=121
+EVALUE=51136.8774244005
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=GGL
+START=61
+END=121
+EVALUE=571.480606829398
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=PLP
+START=137
+END=179
+EVALUE=1537.7843005764
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=DUF4187
+START=137
+END=178
+EVALUE=129170.041311882
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:Pyr_redox_2
+START=189
+END=265
+EVALUE=7.2e+02
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=GIYc
+START=192
+END=274
+EVALUE=865.846926520416
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=KH
+START=193
+END=266
+EVALUE=1251.28367939458
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:TrkA_N
+START=210
+END=266
+EVALUE=1.3e+02
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:Pyr_redox_3
+START=218
+END=265
+EVALUE=19
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:3HCDH_N
+START=235
+END=282
+EVALUE=3.3e+03
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:TrkA_N
+START=329
+END=375
+EVALUE=8.1e+03
+TYPE=PFAM
+STATUS=hidden|threshold
+
+DOMAIN=DnaJ
+START=335
+END=377
+EVALUE=476.301934189143
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=HELICc2
+START=337
+END=430
+EVALUE=239.70161728886
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=DUF1713
+START=340
+END=363
+EVALUE=170644.3529947
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=Pfam:GIDA
+START=392
+END=456
+EVALUE=1.8e+02
+TYPE=PFAM
+STATUS=hidden|threshold
+
 DOMAIN=low_complexity_region
 START=437
 END=449
@@ -45,4 +277,11 @@
 TYPE=INTRINSIC
 STATUS=visible|OK
 
+DOMAIN=IQ
+START=494
+END=516
+EVALUE=808.328375610961
+TYPE=SMART
+STATUS=hidden|threshold
+
 -- FINISHED --
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSRNOP00000043466_SMART_results.json
--- a/test-data/ENSRNOP00000043466_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSRNOP00000043466_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"DOMAIN":"Pfam:NAD_binding_8","START":"1","STATUS":"visible|OK","END":"59","TYPE":"PFAM","EVALUE":"5.7e-10"},{"EVALUE":"8.8e-71","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","STATUS":"visible|OK","END":"435","START":"1"},{"DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"433","START":"421","EVALUE":"0","TYPE":"INTRINSIC"},{"DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"487","START":"470","EVALUE":"0","TYPE":"INTRINSIC"},{"EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"transmembrane_domain","START":"473","STATUS":"visible|OK","END":"495"}]
\ No newline at end of file
+[{"EVALUE":"5.3e-68","STATUS":"visible|OK","START":"1","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","END":"435"},{"END":"59","TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","STATUS":"visible|OK","EVALUE":"1.2e-07","START":"1"},{"END":"105","DOMAIN":"Dynein_light","TYPE":"SMART","EVALUE":"67054.8358179787","STATUS":"hidden|threshold","START":"33"},{"END":"105","DOMAIN":"GGL","TYPE":"SMART","STATUS":"hidden|threshold","EVALUE":"874.738631875967","START":"45"},{"END":"163","DOMAIN":"PLP","TYPE":"SMART","EVALUE":"825.048640862149","STATUS":"hidden|threshold","START":"121"},{"END":"216","DOMAIN":"LU","TYPE":"SMART","START":"127","STATUS":"hidden|threshold","EVALUE":"1177.01388348385"},{"DOMAIN":"KH","TYPE":"SMART","EVALUE":"752.437837788288","STATUS":"hidden|threshold","START":"177","END":"250"},{"END":"273","DOMAIN":"Semialdhyde_dh","TYPE":"SMART","STATUS":"hidden|threshold","START":"194","EVALUE":"117653.158760542"},{"STATUS":"hidden|threshold","EVALUE":"145407.936777029","START":"204","TYPE":"SMART","DOMAIN":"Iso_dh","END":"446"},{"END":"347","STATUS":"hidden|threshold","START":"320","EVALUE":"62249.017211402","DOMAIN":"DUF1713","TYPE":"SMART"},{"END":"443","EVALUE":"1231.55173510477","STATUS":"hidden|threshold","START":"346","DOMAIN":"TOPRIM","TYPE":"SMART"},{"END":"433","EVALUE":"0","STATUS":"hidden|overlap","START":"421","DOMAIN":"low_complexity_region","TYPE":"INTRINSIC"},{"END":"487","STATUS":"hidden|overlap","START":"470","EVALUE":"0","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region"},{"TYPE":"INTRINSIC","DOMAIN":"transmembrane_domain","STATUS":"visible|OK","EVALUE":"0","START":"473","END":"495"},{"TYPE":"SMART","DOMAIN":"IQ","STATUS":"hidden|threshold","EVALUE":"981.716383425574","START":"478","END":"500"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSRNOP00000043466_SMART_results.txt
--- a/test-data/ENSRNOP00000043466_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSRNOP00000043466_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -1,21 +1,85 @@
+
 -- SMART RESULT TEXTFORMAT --
 
-CRC_PASSED=1
-NUMBER_OF_FEATURES_FOUND=5
+CRC_PASSED=0
+NUMBER_OF_FEATURES_FOUND=15
+
+DOMAIN=Pfam:Amino_oxidase
+START=1
+END=435
+EVALUE=5.3e-68
+TYPE=PFAM
+STATUS=visible|OK
 
 DOMAIN=Pfam:NAD_binding_8
 START=1
 END=59
-EVALUE=5.7e-10
+EVALUE=1.2e-07
 TYPE=PFAM
 STATUS=visible|OK
 
-DOMAIN=Pfam:Amino_oxidase
-START=1
-END=435
-EVALUE=8.8e-71
-TYPE=PFAM
-STATUS=visible|OK
+DOMAIN=Dynein_light
+START=33
+END=105
+EVALUE=67054.8358179787
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=GGL
+START=45
+END=105
+EVALUE=874.738631875967
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=PLP
+START=121
+END=163
+EVALUE=825.048640862149
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=LU
+START=127
+END=216
+EVALUE=1177.01388348385
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=KH
+START=177
+END=250
+EVALUE=752.437837788288
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=Semialdhyde_dh
+START=194
+END=273
+EVALUE=117653.158760542
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=Iso_dh
+START=204
+END=446
+EVALUE=145407.936777029
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=DUF1713
+START=320
+END=347
+EVALUE=62249.017211402
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=TOPRIM
+START=346
+END=443
+EVALUE=1231.55173510477
+TYPE=SMART
+STATUS=hidden|threshold
 
 DOMAIN=low_complexity_region
 START=421
@@ -38,4 +102,11 @@
 TYPE=INTRINSIC
 STATUS=visible|OK
 
+DOMAIN=IQ
+START=478
+END=500
+EVALUE=981.716383425574
+TYPE=SMART
+STATUS=hidden|threshold
+
 -- FINISHED --
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSRNOP00000063784_SMART_results.json
--- a/test-data/ENSRNOP00000063784_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSRNOP00000063784_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"TYPE":"PFAM","EVALUE":"1.2e-09","DOMAIN":"Pfam:DAO","STATUS":"visible|OK","END":"169","START":"15"},{"TYPE":"PFAM","EVALUE":"3.1e-07","DOMAIN":"Pfam:FAD_binding_2","STATUS":"visible|OK","END":"55","START":"15"},{"DOMAIN":"Pfam:NAD_binding_8","START":"18","STATUS":"visible|OK","END":"84","EVALUE":"2.8e-17","TYPE":"PFAM"},{"DOMAIN":"Pfam:Amino_oxidase","START":"23","STATUS":"visible|OK","END":"460","EVALUE":"1e-74","TYPE":"PFAM"},{"TYPE":"INTRINSIC","EVALUE":"0","END":"459","STATUS":"hidden|overlap","START":"446","DOMAIN":"low_complexity_region"}]
\ No newline at end of file
+[{"TYPE":"PFAM","DOMAIN":"Pfam:DAO","START":"15","STATUS":"visible|OK","EVALUE":"1.9e-09","END":"169"},{"END":"55","START":"15","STATUS":"visible|OK","EVALUE":"7.6e-07","DOMAIN":"Pfam:FAD_binding_2","TYPE":"PFAM"},{"EVALUE":"1.6e-16","STATUS":"visible|OK","START":"18","TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","END":"84"},{"END":"460","DOMAIN":"Pfam:Amino_oxidase","TYPE":"PFAM","EVALUE":"2.2e-73","STATUS":"visible|OK","START":"23"},{"END":"459","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","EVALUE":"0","STATUS":"hidden|overlap","START":"446"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSRNOP00000063784_SMART_results.txt
--- a/test-data/ENSRNOP00000063784_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSRNOP00000063784_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -6,28 +6,28 @@
 DOMAIN=Pfam:DAO
 START=15
 END=169
-EVALUE=1.2e-09
+EVALUE=1.9e-09
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:FAD_binding_2
 START=15
 END=55
-EVALUE=3.1e-07
+EVALUE=7.6e-07
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:NAD_binding_8
 START=18
 END=84
-EVALUE=2.8e-17
+EVALUE=1.6e-16
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Amino_oxidase
 START=23
 END=460
-EVALUE=1e-74
+EVALUE=2.2e-73
 TYPE=PFAM
 STATUS=visible|OK
 
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSSSCP00000013044_SMART_results.json
--- a/test-data/ENSSSCP00000013044_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSSSCP00000013044_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"DOMAIN":"Pfam:FAD_binding_3","STATUS":"visible|OK","END":"62","START":"13","TYPE":"PFAM","EVALUE":"2.5e-09"},{"START":"14","END":"25","STATUS":"hidden|overlap","DOMAIN":"low_complexity_region","EVALUE":"0","TYPE":"INTRINSIC"},{"END":"58","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:Pyr_redox","EVALUE":"3.3e-07","TYPE":"PFAM"},{"TYPE":"PFAM","EVALUE":"6.8e-09","END":"105","STATUS":"visible|OK","START":"15","DOMAIN":"Pfam:DAO"},{"TYPE":"PFAM","EVALUE":"1.1e-07","START":"15","END":"55","STATUS":"visible|OK","DOMAIN":"Pfam:FAD_binding_2"},{"DOMAIN":"Pfam:NAD_binding_8","STATUS":"visible|OK","END":"84","START":"18","EVALUE":"2.4e-16","TYPE":"PFAM"},{"EVALUE":"6.5e-77","TYPE":"PFAM","START":"23","END":"460","STATUS":"visible|OK","DOMAIN":"Pfam:Amino_oxidase"},{"TYPE":"INTRINSIC","EVALUE":"0","DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"71","START":"60"},{"END":"458","STATUS":"hidden|overlap","START":"446","DOMAIN":"low_complexity_region","EVALUE":"0","TYPE":"INTRINSIC"},{"TYPE":"INTRINSIC","EVALUE":"0","DOMAIN":"transmembrane_domain","START":"497","STATUS":"visible|OK","END":"519"}]
\ No newline at end of file
+[{"END":"62","DOMAIN":"Pfam:FAD_binding_3","TYPE":"PFAM","START":"13","STATUS":"visible|OK","EVALUE":"7.2e-09"},{"DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","START":"14","STATUS":"hidden|overlap","EVALUE":"0","END":"25"},{"START":"15","STATUS":"visible|OK","EVALUE":"1e-08","DOMAIN":"Pfam:DAO","TYPE":"PFAM","END":"108"},{"END":"55","TYPE":"PFAM","DOMAIN":"Pfam:FAD_binding_2","EVALUE":"3.2e-07","STATUS":"visible|OK","START":"15"},{"END":"58","STATUS":"visible|OK","EVALUE":"1e-06","START":"15","DOMAIN":"Pfam:Pyr_redox","TYPE":"PFAM"},{"END":"84","EVALUE":"1.7e-15","STATUS":"visible|OK","START":"18","TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8"},{"DOMAIN":"Pfam:Amino_oxidase","TYPE":"PFAM","EVALUE":"6.3e-76","STATUS":"visible|OK","START":"23","END":"460"},{"END":"71","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","START":"60","EVALUE":"0"},{"DOMAIN":"low_complexity_region","TYPE":"INTRINSIC","STATUS":"hidden|overlap","EVALUE":"0","START":"446","END":"458"},{"END":"519","STATUS":"visible|OK","EVALUE":"0","START":"497","DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSSSCP00000013044_SMART_results.txt
--- a/test-data/ENSSSCP00000013044_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSSSCP00000013044_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -6,7 +6,7 @@
 DOMAIN=Pfam:FAD_binding_3
 START=13
 END=62
-EVALUE=2.5e-09
+EVALUE=7.2e-09
 TYPE=PFAM
 STATUS=visible|OK
 
@@ -17,38 +17,38 @@
 TYPE=INTRINSIC
 STATUS=hidden|overlap
 
-DOMAIN=Pfam:Pyr_redox
-START=15
-END=58
-EVALUE=3.3e-07
-TYPE=PFAM
-STATUS=visible|OK
-
 DOMAIN=Pfam:DAO
 START=15
-END=105
-EVALUE=6.8e-09
+END=108
+EVALUE=1e-08
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:FAD_binding_2
 START=15
 END=55
-EVALUE=1.1e-07
+EVALUE=3.2e-07
+TYPE=PFAM
+STATUS=visible|OK
+
+DOMAIN=Pfam:Pyr_redox
+START=15
+END=58
+EVALUE=1e-06
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:NAD_binding_8
 START=18
 END=84
-EVALUE=2.4e-16
+EVALUE=1.7e-15
 TYPE=PFAM
 STATUS=visible|OK
 
 DOMAIN=Pfam:Amino_oxidase
 START=23
 END=460
-EVALUE=6.5e-77
+EVALUE=6.3e-76
 TYPE=PFAM
 STATUS=visible|OK
 
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSSSCP00000028353_SMART_results.json
--- a/test-data/ENSSSCP00000028353_SMART_results.json	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSSSCP00000028353_SMART_results.json	Tue Dec 22 04:29:12 2020 +0000
@@ -1,1 +1,1 @@
-[{"TYPE":"PFAM","EVALUE":"1.9e-09","DOMAIN":"Pfam:NAD_binding_8","START":"1","STATUS":"visible|OK","END":"59"},{"EVALUE":"9.8e-76","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","STATUS":"visible|OK","END":"435","START":"1"},{"TYPE":"INTRINSIC","EVALUE":"0","DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","END":"433","START":"421"},{"DOMAIN":"transmembrane_domain","START":"474","STATUS":"visible|OK","END":"496","TYPE":"INTRINSIC","EVALUE":"0"}]
\ No newline at end of file
+[{"END":"435","TYPE":"PFAM","DOMAIN":"Pfam:Amino_oxidase","STATUS":"visible|OK","START":"1","EVALUE":"2.7e-73"},{"TYPE":"PFAM","DOMAIN":"Pfam:NAD_binding_8","STATUS":"visible|OK","START":"1","EVALUE":"3.3e-07","END":"59"},{"END":"105","STATUS":"hidden|threshold","EVALUE":"283.309567345626","START":"45","TYPE":"SMART","DOMAIN":"GGL"},{"STATUS":"hidden|threshold","START":"63","EVALUE":"346.27650894861","TYPE":"SMART","DOMAIN":"BRIGHT","END":"165"},{"STATUS":"hidden|threshold","EVALUE":"1521.18401530361","START":"115","TYPE":"SMART","DOMAIN":"GLUCA","END":"140"},{"DOMAIN":"PLP","TYPE":"SMART","STATUS":"hidden|threshold","START":"121","EVALUE":"1713.48530278146","END":"163"},{"STATUS":"hidden|threshold","START":"121","EVALUE":"163349.032061676","TYPE":"SMART","DOMAIN":"DUF4187","END":"162"},{"END":"284","DOMAIN":"PTPc_motif","TYPE":"SMART","START":"144","STATUS":"hidden|threshold","EVALUE":"1396.15053915469"},{"DOMAIN":"GIYc","TYPE":"SMART","STATUS":"hidden|threshold","START":"176","EVALUE":"628.116969347314","END":"258"},{"END":"250","TYPE":"SMART","DOMAIN":"KH","START":"177","STATUS":"hidden|threshold","EVALUE":"1355.82882112978"},{"DOMAIN":"Semialdhyde_dh","TYPE":"SMART","STATUS":"hidden|threshold","START":"194","EVALUE":"65441.294146274","END":"272"},{"END":"347","DOMAIN":"DUF1713","TYPE":"SMART","STATUS":"hidden|threshold","START":"320","EVALUE":"111634.630322951"},{"END":"497","STATUS":"hidden|threshold","START":"386","EVALUE":"96607.3554010613","TYPE":"SMART","DOMAIN":"RES"},{"END":"433","TYPE":"INTRINSIC","DOMAIN":"low_complexity_region","STATUS":"hidden|overlap","EVALUE":"0","START":"421"},{"DOMAIN":"transmembrane_domain","TYPE":"INTRINSIC","EVALUE":"0","STATUS":"visible|OK","START":"474","END":"496"},{"DOMAIN":"IQ","TYPE":"SMART","START":"478","STATUS":"hidden|threshold","EVALUE":"1096.98299469282","END":"500"}]
\ No newline at end of file
diff -r a3b26189fee3 -r 8c24cc7431aa test-data/ENSSSCP00000028353_SMART_results.txt
--- a/test-data/ENSSSCP00000028353_SMART_results.txt	Thu Jun 15 07:52:09 2017 -0400
+++ b/test-data/ENSSSCP00000028353_SMART_results.txt	Tue Dec 22 04:29:12 2020 +0000
@@ -1,21 +1,99 @@
+
 -- SMART RESULT TEXTFORMAT --
 
-CRC_PASSED=1
-NUMBER_OF_FEATURES_FOUND=4
+CRC_PASSED=0
+NUMBER_OF_FEATURES_FOUND=16
+
+DOMAIN=Pfam:Amino_oxidase
+START=1
+END=435
+EVALUE=2.7e-73
+TYPE=PFAM
+STATUS=visible|OK
 
 DOMAIN=Pfam:NAD_binding_8
 START=1
 END=59
-EVALUE=1.9e-09
+EVALUE=3.3e-07
 TYPE=PFAM
 STATUS=visible|OK
 
-DOMAIN=Pfam:Amino_oxidase
-START=1
-END=435
-EVALUE=9.8e-76
-TYPE=PFAM
-STATUS=visible|OK
+DOMAIN=GGL
+START=45
+END=105
+EVALUE=283.309567345626
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=BRIGHT
+START=63
+END=165
+EVALUE=346.27650894861
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=GLUCA
+START=115
+END=140
+EVALUE=1521.18401530361
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=PLP
+START=121
+END=163
+EVALUE=1713.48530278146
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=DUF4187
+START=121
+END=162
+EVALUE=163349.032061676
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=PTPc_motif
+START=144
+END=284
+EVALUE=1396.15053915469
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=GIYc
+START=176
+END=258
+EVALUE=628.116969347314
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=KH
+START=177
+END=250
+EVALUE=1355.82882112978
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=Semialdhyde_dh
+START=194
+END=272
+EVALUE=65441.294146274
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=DUF1713
+START=320
+END=347
+EVALUE=111634.630322951
+TYPE=SMART
+STATUS=hidden|threshold
+
+DOMAIN=RES
+START=386
+END=497
+EVALUE=96607.3554010613
+TYPE=SMART
+STATUS=hidden|threshold
 
 DOMAIN=low_complexity_region
 START=421
@@ -31,4 +109,11 @@
 TYPE=INTRINSIC
 STATUS=visible|OK
 
+DOMAIN=IQ
+START=478
+END=500
+EVALUE=1096.98299469282
+TYPE=SMART
+STATUS=hidden|threshold
+
 -- FINISHED --