Mercurial > repos > earlhaminst > t_coffee
diff filter_by_fasta_ids.py @ 7:0a189243186d draft
planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee commit 88e1592fa528db1941bce52c588d4347a69cc745
author | earlhaminst |
---|---|
date | Wed, 18 Sep 2019 06:37:40 -0400 |
parents | fa59d6fea7f5 |
children |
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--- a/filter_by_fasta_ids.py Wed Apr 25 11:15:13 2018 -0400 +++ b/filter_by_fasta_ids.py Wed Sep 18 06:37:40 2019 -0400 @@ -35,15 +35,11 @@ def main(): - ''' the main function''' - used_sequences = set() work_summary = {'wanted': 0, 'found': 0, 'duplicates': 0} - targets = [] with open(sys.argv[1]) as f_target: - for line in f_target.readlines(): - targets.append(">%s" % line.strip().upper()) + targets = [">%s" % _.strip().upper() for _ in f_target] work_summary['wanted'] = len(targets)