view t_coffee_to_cigar.xml @ 0:304d1a82708f draft default tip

planemo upload for repository https://github.com/TGAC/earlham-galaxytools/tree/master/tools/t_coffee_to_cigar commit e24b91d3051c422ee2a20caf8bb12f0896e2c84a-dirty

<tool id="t_coffee_to_cigar" name="T-Coffee to CIGAR" version="0.2.0">
    <description>
        Converts T-Coffee FASTA alignments to CIGAR strings
    </description>
    <command>
<![CDATA[
perl $__tool_directory__/t_coffee_to_cigar.pl
$input
> $output
]]>
    </command>

    <inputs>
        <param name="input" type="data" format="fasta" label="FASTA alignments from T-Coffee" />
    </inputs>

    <outputs>
        <data name="output" format="tabular" label="${tool.name} on ${on_string}" />
    </outputs>

    <tests>
        <test>
            <param name="input" ftype="fasta" value="input.fasta" />
            <output name="output" file="out.tabular" />
        </test>
    </tests>

    <help>
<![CDATA[
Simple tool to convert FASTA alignments produced by T-Coffee to CIGAR format.
]]>
    </help>
    <citations>
    </citations>
</tool>